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  5. Lfl_g26422

Lfl_g26422


Description : subfamily ABCG transporter & original description: none


Gene families : OG0000888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000888_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g26422
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00181450 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
AMTR_s00060p00208620 evm_27.TU.AmTr_v1... External stimuli response.biotic... 0.03 OrthoFinder output from all 47 species
AMTR_s00063p00178530 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.04 OrthoFinder output from all 47 species
AT3G53510 No alias ABC-2 type transporter family protein 0.04 OrthoFinder output from all 47 species
AT3G55110 No alias ABC-2 type transporter family protein 0.04 OrthoFinder output from all 47 species
Aspi01Gene05499.t1 Aspi01Gene05499 subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000828 No alias subfamily ABCG transporter & original description: CDS=1-2274 0.03 OrthoFinder output from all 47 species
Ceric.14G055400.1 Ceric.14G055400 subfamily ABCG transporter & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021068.3 ABCG26, WBC27 ABC transporter G family member 26 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01032625001 No alias Solute transport.primary active transport.ABC... 0.05 OrthoFinder output from all 47 species
Gb_20468 No alias subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
LOC_Os01g42900.1 LOC_Os01g42900 subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
MA_10432886g0010 No alias subfamily ABCG transporter 0.05 OrthoFinder output from all 47 species
Mp3g16700.1 No alias subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Mp5g05620.1 No alias subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Mp5g15770.1 No alias subfamily ABCG transporter 0.05 OrthoFinder output from all 47 species
Ore_g26286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26296 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32502 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g054890.4.1 Solyc05g054890 subfamily ABCG transporter 0.02 OrthoFinder output from all 47 species
Solyc09g005970.1.1 Solyc09g005970 subfamily ABCG transporter 0.03 OrthoFinder output from all 47 species
Tin_g40098 No alias ABC-G-type lipid transporter *(STR) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027604_P001 Zm00001e027604 subfamily ABCG transporter 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 61 207
IPR013525 ABC_2_trans 336 541
No external refs found!