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  5. Sam_g10911

Sam_g10911


Description : not classified & original description: none


Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g10911

Target Alias Description ECC score Gene Family Method Actions
Adi_g018859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08489 CP31B not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07067 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14081 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0017.g014465 ATRBP31, CP31,... not classified & original description: CDS=173-1078 0.02 OrthoFinder output from all 47 species
Azfi_s0444.g070620 ATRBP31, CP31,... not classified & original description: CDS=17-1102 0.04 OrthoFinder output from all 47 species
Azfi_s1959.g108384 ATRBP31, CP31,... not classified & original description: CDS=169-1023 0.03 OrthoFinder output from all 47 species
Dde_g05227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007596001 CP31B RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01022600001 PDE322, CP33 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.02 OrthoFinder output from all 47 species
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.02 OrthoFinder output from all 47 species
LOC_Os03g25960.1 LOC_Os03g25960 RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os07g43810.1 LOC_Os07g43810 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Len_g10051 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g16035 CP31B not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g01140 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02798 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g02835 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18180 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g086150.2.1 Solyc10g086150 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana... 0.02 OrthoFinder output from all 47 species
Spa_g07687 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 104 174
IPR000504 RRM_dom 197 267
No external refs found!