1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g11612

Sam_g11612


Description : endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA biogenesis complex & original description: none


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11612
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00026p00051870 DCL4, ATDCL4,... RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.04 OrthoFinder output from all 47 species
AMTR_s00033p00127000 ATDCL3, DCL3,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.04 OrthoFinder output from all 47 species
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.02 OrthoFinder output from all 47 species
Aop_g31318 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Azfi_s0154.g053526 DCL1, CAF,... not classified & original description: CDS=655-2703 0.03 OrthoFinder output from all 47 species
Cba_g01358 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
Cba_g38723 DCL4, ATDCL4 endoribonuclease (DCL2) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Cba_g62226 DCL1, CAF,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08330 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01001045001 DCL4, ATDCL4 RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.03 OrthoFinder output from all 47 species
Msp_g44227 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Ore_g19703 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Pp3c1_24960V3.1 DCL1, CAF,... dicer-like 1 0.01 OrthoFinder output from all 47 species
Ppi_g29457 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012196 DCL4, ATDCL4 not classified & original description: CDS=1147-2754 0.02 OrthoFinder output from all 47 species
Solyc08g067210.3.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR003100 PAZ_dom 1223 1353
IPR001650 Helicase_C 663 780
IPR000999 RNase_III_dom 1390 1535
IPR000999 RNase_III_dom 1611 1724
IPR006935 Helicase/UvrB_N 259 426
IPR014720 dsRBD_dom 1751 1811
No external refs found!