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  5. Sam_g11868

Sam_g11868


Description : cyclic nucleotide-gated cation channel *(CNGC) & original description: none


Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11868
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AT1G19780 ATCNGC8, CNGC8 cyclic nucleotide gated channel 8 0.02 OrthoFinder output from all 47 species
AT2G46430 ATCNGC3, CNGC3, CNGC3.C cyclic nucleotide gated channel 3 0.02 OrthoFinder output from all 47 species
AT2G46440 CNGC11, ATCNGC11 cyclic nucleotide-gated channels 0.02 OrthoFinder output from all 47 species
AT3G17690 CNGC19, ATCNGC19 cyclic nucleotide gated channel 19 0.04 OrthoFinder output from all 47 species
AT3G17700 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-binding transporter 1 0.02 OrthoFinder output from all 47 species
AT5G14870 CNGC18, ATCNGC18 cyclic nucleotide-gated channel 18 0.02 OrthoFinder output from all 47 species
AT5G57940 CNGC5, ATCNGC5 cyclic nucleotide gated channel 5 0.02 OrthoFinder output from all 47 species
Aob_g03484 DND1, ATCNGC2, CNGC2 temperature sensor protein *(CNGC2) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene46957.t1 CNGC15,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0069.g036528 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0301.g063721 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Ceric.23G068600.1 CNGC15,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Ceric.37G059700.1 CNGC15,... cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Ehy_g05003 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Gb_32552 CNGC5, ATCNGC5 cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
LOC_Os02g54760.1 ATCNGC17,... cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species
LOC_Os12g06570.1 CNGC18,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
LOC_Os12g28260.1 CNGC7, ATCNGC7,... cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species
Msp_g06561 CNGC5, ATCNGC5 cyclic nucleotide-gated cation channel *(CNGC) &... 0.04 OrthoFinder output from all 47 species
Msp_g14154 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Msp_g24602 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Nbi_g01203 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.04 OrthoFinder output from all 47 species
Nbi_g09414 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Nbi_g11227 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Ore_g09435 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.06 OrthoFinder output from all 47 species
Pir_g29423 ATCNGC1, CNGC1 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Pir_g38103 DND1, ATCNGC2, CNGC2 temperature sensor protein *(CNGC2) & original description: none 0.03 OrthoFinder output from all 47 species
Smo266723 ATCNGC20, CNGC20, CNBT1 Solute transport.channels.VIC superfamily.cyclic... 0.03 OrthoFinder output from all 47 species
Solyc02g086990.4.1 CNGC18,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Solyc03g007260.3.1 ATCNGC1, CNGC1,... cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species
Solyc06g051920.4.1 ATCNGC1, CNGC1,... cyclic nucleotide-gated cation channel (CNGC) 0.04 OrthoFinder output from all 47 species
Solyc07g005590.3.1 CNGC5, ATCNGC5,... cyclic nucleotide-gated cation channel (CNGC) 0.04 OrthoFinder output from all 47 species
Solyc12g010010.2.1 CNGC5, ATCNGC5,... cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species
Spa_g08368 CNGC5, ATCNGC5 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Zm00001e011591_P002 CNGC18,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Zm00001e024846_P003 ATCNGC1, CNGC1,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEA Interproscan
BP GO:0006811 monoatomic ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 82 408
No external refs found!