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  5. Sam_g11945

Sam_g11945


Description : not classified & original description: none


Gene families : OG0000248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000248_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g11945
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00120p00051630 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT4G23380 No alias Protein of Unknown Function (DUF239) 0.02 OrthoFinder output from all 47 species
AT5G25960 No alias Protein of Unknown Function (DUF239) 0.02 OrthoFinder output from all 47 species
Adi_g044988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g047337 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g095488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07844 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13264 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene07912.t1 Aspi01Gene07912 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene38492.t1 Aspi01Gene38492 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0079.g038324 No alias not classified & original description: CDS=37-1503 0.05 OrthoFinder output from all 47 species
Cba_g73343 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.19G057700.1 Ceric.19G057700 not classified & original description: pacid=50575152... 0.02 OrthoFinder output from all 47 species
Ceric.26G056300.1 Ceric.26G056300 not classified & original description: pacid=50600342... 0.04 OrthoFinder output from all 47 species
Ehy_g06829 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01022378001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os01g36660.1 LOC_Os01g36660 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os03g59240.1 LOC_Os03g59240 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g07764.2 LOC_Os05g07764 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os07g10530.1 LOC_Os07g10530 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g13261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04605 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40820 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g18743 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02975 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15943 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011724 No alias not classified & original description: CDS=841-2229 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0187.g025098 No alias not classified & original description: CDS=473-1768 0.02 OrthoFinder output from all 47 species
Sam_g16338 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38438 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g39518 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g52777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g070080.1.1 Solyc11g070080 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e016772_P001 Zm00001e016772 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e020747_P001 Zm00001e020747 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e031210_P001 Zm00001e031210 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR004314 Neprosin 222 434
IPR025521 Neprosin_propep 64 198
No external refs found!