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  5. Sam_g12011

Sam_g12011


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12011

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00156450 REME1,... Pentatricopeptide repeat-containing protein At2g03880,... 0.02 OrthoFinder output from all 47 species
AT5G61400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004506 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g008203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055244 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g061031 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101277 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21991 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28308 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07454 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14128 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22442 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30091 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g17880 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene03152.t1 Aspi01Gene03152 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28610.t1 REME1, Aspi01Gene28610 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene40416.t1 CRR22, Aspi01Gene40416 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011650 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2676 0.03 OrthoFinder output from all 47 species
Azfi_s0184.g056534 OTP84 not classified & original description: CDS=1-2040 0.03 OrthoFinder output from all 47 species
Cba_g05567 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07412 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07752 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19787 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34646 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g37893 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67392 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G000400.1 Ceric.07G000400 not classified & original description: pacid=50627195... 0.02 OrthoFinder output from all 47 species
Ceric.13G028100.1 Ceric.13G028100 not classified & original description: pacid=50635194... 0.02 OrthoFinder output from all 47 species
Ceric.17G054900.1 DOT4, Ceric.17G054900 not classified & original description: pacid=50617812... 0.02 OrthoFinder output from all 47 species
Ceric.28G018400.1 Ceric.28G018400 not classified & original description: pacid=50571000... 0.03 OrthoFinder output from all 47 species
Dac_g02827 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g27999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43242 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38468 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39406 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21685 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os07g20420.1 LOC_Os07g20420 Pentatricopeptide repeat-containing protein At3g26782,... 0.02 OrthoFinder output from all 47 species
Len_g12162 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18041 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18045 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10694 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_103380g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 OrthoFinder output from all 47 species
MA_187514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Msp_g31423 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15034 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25173 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17041 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26038 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28899 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08638 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g44175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40150 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006560 No alias not classified & original description: CDS=1-2253 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009590 No alias not classified & original description: CDS=1-2562 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011851 OTP84 not classified & original description: CDS=1-2175 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012739 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013068 No alias not classified & original description: CDS=1-1464 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019309 No alias not classified & original description: CDS=1-1605 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020410 No alias not classified & original description: CDS=1-2748 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0177.g024659 No alias not classified & original description: CDS=1-642 0.02 OrthoFinder output from all 47 species
Sam_g12390 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13864 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14712 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16549 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g21944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g22472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26608 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g37213 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g007430.1.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
Spa_g09360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28935 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05655 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31218 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 614 660
IPR002885 Pentatricopeptide_repeat 108 156
IPR002885 Pentatricopeptide_repeat 312 342
IPR002885 Pentatricopeptide_repeat 212 240
IPR002885 Pentatricopeptide_repeat 413 442
IPR002885 Pentatricopeptide_repeat 82 104
IPR002885 Pentatricopeptide_repeat 514 544
IPR002885 Pentatricopeptide_repeat 717 747
No external refs found!