Sam_g12066


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12066

Target Alias Description ECC score Gene Family Method Actions
Adi_g004298 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036795 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g040549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g045979 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g076965 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099097 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21708 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g42385 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35876 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g18934 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09005 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g20073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27914 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28209 DOT4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28661 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29803 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37337 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene24209.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63349.t1 Aspi01Gene63349 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65890.t1 Aspi01Gene65890 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023864 No alias not classified & original description: CDS=1-2211 0.02 OrthoFinder output from all 47 species
Azfi_s0063.g035332 No alias not classified & original description: CDS=1-1728 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035815 No alias not classified & original description: CDS=1-2163 0.02 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.02 OrthoFinder output from all 47 species
Azfi_s0229.g059115 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2115 0.03 OrthoFinder output from all 47 species
Azfi_s0583.g078513 No alias not classified & original description: CDS=1-2793 0.03 OrthoFinder output from all 47 species
Cba_g04690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06947 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07050 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07735 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22562 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g26542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29991 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g75118 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G032600.1 Ceric.09G032600 not classified & original description: pacid=50587514... 0.02 OrthoFinder output from all 47 species
Ceric.23G075300.1 Ceric.23G075300 not classified & original description: pacid=50609898... 0.02 OrthoFinder output from all 47 species
Dac_g26546 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04371 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g05900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08485 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22601 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28695 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g28696 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07052 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15341 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17807 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008656001 No alias Pentatricopeptide repeat-containing protein At5g50990... 0.02 OrthoFinder output from all 47 species
LOC_Os06g41040.1 LOC_Os06g41040 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g25473 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g36226 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g54974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g59693 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07019 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07499 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g15749 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 47 species
Msp_g21026 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41125 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15842 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24808 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g36314 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16554 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g59837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15726 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29945 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g32536 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12807 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31296 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012042 No alias not classified & original description: CDS=1-3273 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0097.g019430 No alias not classified & original description: CDS=1-4416 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020618 REME1 not classified & original description: CDS=24-1478 0.02 OrthoFinder output from all 47 species
Sam_g26489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g46633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo105729 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.01 OrthoFinder output from all 47 species
Solyc09g090220.3.1 Solyc09g090220 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Spa_g20461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02798 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04193 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17148 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23794 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g34880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35676 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0004668 protein-arginine deiminase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009445 putrescine metabolic process IEP HCCA
BP GO:0009446 putrescine biosynthetic process IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 199 246
IPR046848 E_motif 316 365
IPR002885 Pentatricopeptide_repeat 173 195
IPR002885 Pentatricopeptide_repeat 100 130
IPR002885 Pentatricopeptide_repeat 276 297
No external refs found!