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  5. Sam_g12139

Sam_g12139


Description : MYB class-R2R3 subgroup-22/23 transcription factor & original description: none


Gene families : OG0000080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000080_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12139
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00264600 AtMYB117, LOF1,... RNA biosynthesis.transcriptional activation.MYB... 0.01 OrthoFinder output from all 47 species
AT1G14350 AtMYB124, MYB124, FLP Duplicated homeodomain-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G26780 AtMYB117, LOF1, MYB117 myb domain protein 117 0.02 OrthoFinder output from all 47 species
AT1G73410 MYB54, ATMYB54 myb domain protein 54 0.02 OrthoFinder output from all 47 species
AT3G27785 PGA37, ATMYB118, MYB118 myb domain protein 118 0.03 OrthoFinder output from all 47 species
Als_g15721 LOF2, MYB105, ATMYB105 MYB class-R2R3 subgroup-21 transcription factor &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene32034.t1 AtMYB124,... MYB class-R2R3 transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0130.g049054 MYB54, ATMYB54 not classified & original description: CDS=1-720 0.03 OrthoFinder output from all 47 species
Azfi_s0173.g055749 MYB3R-1,... R1R2R3-MYB transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Cba_g53891 MYB54, ATMYB54 MYB class-R2R3 subgroup-21 transcription factor &... 0.02 OrthoFinder output from all 47 species
Gb_01889 BW52, ATMYB52, MYB52 transcription factor (MYB) 0.02 OrthoFinder output from all 47 species
LOC_Os01g12860.1 MYB3R-1,... transcription factor (MYB) 0.02 OrthoFinder output from all 47 species
LOC_Os01g16810.1 LOF2, MYB105,... transcription factor (MYB) 0.02 OrthoFinder output from all 47 species
Lfl_g25897 MYB77 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_9684426g0010 MYB73, ATMYB73 transcription factor (MYB) 0.02 OrthoFinder output from all 47 species
Ore_g32846 MYB77 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.02 OrthoFinder output from all 47 species
Ore_g33238 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c17_19960V3.1 Pp3c17_19960 No annotation 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019382 MYB73, ATMYB73 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.03 OrthoFinder output from all 47 species
Solyc05g052850.3.1 AtMYB109,... transcription factor (MYB) 0.02 OrthoFinder output from all 47 species
Solyc11g071300.2.1 MYB3R-1,... transcription factor (MYB) 0.02 OrthoFinder output from all 47 species
Zm00001e014203_P004 AtMYB3R4,... transcription factor (MYB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 22 68
IPR001005 SANT/Myb 76 118
No external refs found!