Sam_g12231


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12231

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00129840 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.02 OrthoFinder output from all 47 species
AT5G13230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g003740 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014778 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036420 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080993 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21449 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23769 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36487 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61873 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03394 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27919 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28240 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g37552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g41844 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02020 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04252 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20359 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28718 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11731.t1 Aspi01Gene11731 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34532.t1 Aspi01Gene34532 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34544.t1 Aspi01Gene34544 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000621 No alias ssDNA-binding protein *(OSB) & original description: CDS=97-654 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011478 No alias not classified & original description: CDS=1-2919 0.03 OrthoFinder output from all 47 species
Azfi_s0104.g044769 No alias not classified & original description: CDS=1-2490 0.04 OrthoFinder output from all 47 species
Cba_g20779 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20862 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29991 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.17G076500.1 Ceric.17G076500 not classified & original description: pacid=50617139... 0.02 OrthoFinder output from all 47 species
Ceric.34G047900.1 Ceric.34G047900 not classified & original description: pacid=50622720... 0.02 OrthoFinder output from all 47 species
Dde_g04417 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07340 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g10527 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g49997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005260001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 OrthoFinder output from all 47 species
GSVIVT01017823001 No alias Pentatricopeptide repeat-containing protein At2g36980,... 0.02 OrthoFinder output from all 47 species
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g11470.1 LOC_Os01g11470 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g05159 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18945 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05045 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35084 OTP85 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10338179g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
Msp_g24971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g03803 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04450 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10800 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13578 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g17079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g20500 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g25207 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g29119 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g01992 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g24441 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26310 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03108 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g61389 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63519 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22621 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29837 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g32242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29940 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53705 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g54174 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59920 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000865 No alias not classified & original description: CDS=3429-6017 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001739 No alias not classified & original description: CDS=1-1443 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008337 No alias not classified & original description: CDS=1-3675 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013068 No alias not classified & original description: CDS=1-1464 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013156 No alias not classified & original description: CDS=1-2970 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022190 No alias not classified & original description: CDS=1-2487 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0252.g026781 No alias not classified & original description: CDS=1-2700 0.03 OrthoFinder output from all 47 species
Sam_g14049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g30171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo92610 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.02 OrthoFinder output from all 47 species
Spa_g08806 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20467 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08973 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e033826_P001 Zm00001e033826 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 96 120
IPR002885 Pentatricopeptide_repeat 21 65
No external refs found!