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  5. Sam_g12543

Sam_g12543


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g12543

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AT5G07410 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g17897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06584 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30602.t1 Aspi01Gene30602 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g024992 No alias pectin methylesterase & original description: CDS=226-1431 0.02 OrthoFinder output from all 47 species
Azfi_s0040.g026602 No alias pectin methylesterase & original description: CDS=187-1626 0.03 OrthoFinder output from all 47 species
Azfi_s0040.g026612 No alias pectin methylesterase & original description: CDS=139-1269 0.03 OrthoFinder output from all 47 species
Azfi_s0055.g033955 No alias pectin methylesterase & original description: CDS=387-1493 0.04 OrthoFinder output from all 47 species
Azfi_s0516.g074982 No alias not classified & original description: CDS=1-498 0.03 OrthoFinder output from all 47 species
Ceric.03G061600.1 Ceric.03G061600 pectin methylesterase & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.10G071400.1 Ceric.10G071400 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.11G006300.1 Ceric.11G006300 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.19G035800.1 Ceric.19G035800 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.26G016900.1 Ceric.26G016900 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g11820 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Dac_g16891 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g15370 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
GSVIVT01023786001 ATPE11, PE11 Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
MA_10428207g0010 No alias Probable pectinesterase 53 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp2g19430.1 No alias pectin methylesterase 0.01 OrthoFinder output from all 47 species
Msp_g10586 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g38949 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g39582 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g31349 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g18465 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16125 No alias EC_3.1 hydrolase acting on ester bond & original... 0.03 OrthoFinder output from all 47 species
Spa_g11483 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 2 103
No external refs found!