Sam_g12739

Description : component *(bL27c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0002147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002147_tree

Sequence : coding (download), protein (download)

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Type	Description	Actions
Neighborhood	HRR: Sam_g12739

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00039290	RPL27,...	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
AT5G40950	RPL27	ribosomal protein large subunit 27	0.07	OrthoFinder output from all 47 species
Adi_g016906	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ala_g26415	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Als_g25736	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Aob_g22562	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Aop_g02391	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Azfi_s0004.g008370	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Cba_g10062	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ceric.02G065700.1	RPL27, Ceric.02G065700	component *(bL27c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Cre06.g300800	RPL27	50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Dac_g01937	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g13830	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Dde_g18021	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ehy_g20192	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01033086001	RPL27	Protein biosynthesis.organelle translation...	0.08	OrthoFinder output from all 47 species
Gb_27573	RPL27	component psRPL27 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
LOC_Os01g69950.1	RPL27, LOC_Os01g69950	component psRPL27 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Len_g00370	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Lfl_g00153	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
MA_19490g0010	RPL27	component psRPL27 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Mp5g06170.1	RPL27	component psRPL27 of large ribosomal subunit proteome	0.07	OrthoFinder output from all 47 species
Msp_g02665	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Nbi_g16845	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ore_g05914	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g09149	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0025.g009407	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Smo159042	RPL27	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
Solyc11g068820.3.1	RPL27, Solyc11g068820	component psRPL27 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Spa_g07212	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Spa_g07213	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Tin_g00464	RPL27	component *(bL27c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Zm00001e028431_P003	RPL27, Zm00001e028431	component psRPL27 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004356	glutamate-ammonia ligase activity	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006541	glutamine metabolic process	IEP	HCCA
BP	GO:0006542	glutamine biosynthetic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006801	superoxide metabolic process	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016211	ammonia ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001684	Ribosomal_L27	45	124

External Links

No external refs found!

Sam_g12739

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation