Sam_g12930

Description : component *(uL29c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0004758 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004758_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g12930

Target	Alias	Description	ECC score	Gene Family Method
AT5G65220	No alias	Ribosomal L29 family protein	0.03	OrthoFinder output from all 47 species
Ala_g00554	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Azfi_s0048.g030677	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cba_g00374	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.34G037300.1	Ceric.34G037300	component *(uL29c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Cre06.g259850	No alias	No description available	0.03	OrthoFinder output from all 47 species
Dde_g10427	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
LOC_Os02g51790.1	LOC_Os02g51790	component psRPL29 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
MA_10431457g0010	No alias	component psRPL29 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Mp4g10390.1	No alias	component psRPL29 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Pp3c15_20650V3.1	Pp3c15_20650	Ribosomal L29 family protein	0.02	OrthoFinder output from all 47 species
Solyc06g072470.4.1	Solyc06g072470	component psRPL29 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Spa_g03535	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Spa_g13994	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004655	porphobilinogen synthase activity	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	63	118

External Links

No external refs found!

Sam_g12930

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation