Sam_g13024

Description : subgroup ERF-IV/DREB2 transcription factor & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g13024
Cluster	HCCA: Cluster_112

Target	Alias	Description	ECC score	Gene Family Method
AT3G20310	ERF7, ATERF7, ATERF-7	ethylene response factor 7	0.02	OrthoFinder output from all 47 species
Aev_g08193	DEAR1, CEJ1, ATERF#011	subgroup ERF-II transcription factor *(ERF19/20) &...	0.03	OrthoFinder output from all 47 species
Ala_g03893	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Als_g36009	DEAR3	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.03	OrthoFinder output from all 47 species
Aob_g08822	ATERF-9, ERF9, ATERF9	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene03290.t1	Aspi01Gene03290	subgroup ERF-I transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene24329.t1	Aspi01Gene24329	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene24330.t1	Aspi01Gene24330	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene29233.t1	Rap2.6L, Aspi01Gene29233	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene53915.t1	Aspi01Gene53915	subgroup ERF-II transcription factor *(ERF16/17/18) &...	0.02	OrthoFinder output from all 47 species
Azfi_s0234.g059449	No alias	subgroup ERF-III transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ehy_g02414	ERF72, EBP, ATEBP, RAP2.3	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Ehy_g07535	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ehy_g11833	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Solyc03g123500.4.1	RAP2.12, Solyc03g123500	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Spa_g52658	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g14842	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Tin_g21433	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Tin_g37433	TINY2	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Zm00001e016064_P001	RAP2.2, Zm00001e016064	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Zm00001e041533_P001	ERF38, ATERF38,...	transcription factor (DREB)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004592	pantoate-beta-alanine ligase activity	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0015939	pantothenate metabolic process	IEP	HCCA
BP	GO:0015940	pantothenate biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	65	114

External Links

No external refs found!

Sam_g13024

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation