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  5. Sam_g13534

Sam_g13534


Description : E3 ubiquitin ligase component *(Doa10) of ER-associated protein degradation (ERAD) machinery & original description: none


Gene families : OG0001940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13534

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00035p00240580 evm_27.TU.AmTr_v1... Protein degradation.ER-associated protein degradation... 0.02 OrthoFinder output from all 47 species
AT4G34100 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g050431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055492 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.04 OrthoFinder output from all 47 species
Adi_g104776 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Aev_g27804 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Aob_g08474 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Azfi_s0176.g056063 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Ceric.22G052000.1 Ceric.22G052000 E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
Dcu_g03181 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.04 OrthoFinder output from all 47 species
GSVIVT01022083001 No alias Protein degradation.ER-associated protein degradation... 0.06 OrthoFinder output from all 47 species
GSVIVT01031710001 No alias Protein degradation.ER-associated protein degradation... 0.09 OrthoFinder output from all 47 species
Gb_37944 No alias ubiquitin ligase component Doa10 of ER-associated... 0.03 OrthoFinder output from all 47 species
LOC_Os06g43210.1 LOC_Os06g43210 ubiquitin ligase component Doa10 of ER-associated... 0.03 OrthoFinder output from all 47 species
Lfl_g09550 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.02 OrthoFinder output from all 47 species
MA_130450g0010 No alias ubiquitin ligase component Doa10 of ER-associated... 0.03 OrthoFinder output from all 47 species
Mp2g15190.1 No alias ubiquitin ligase component Doa10 of ER-associated... 0.03 OrthoFinder output from all 47 species
Ore_g38213 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Solyc01g020190.2.1 Solyc01g020190 Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Zm00001e037502_P001 Zm00001e037502 ubiquitin ligase component Doa10 of ER-associated... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 37 83
No external refs found!