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  5. Sam_g13739

Sam_g13739


Description : not classified & original description: none


Gene families : OG0000753 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000753_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13739

Target Alias Description ECC score Gene Family Method Actions
Adi_g014262 AML5, ML5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21689 AML5, ML5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g33055 AML5, ML5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02681 AML5, ML5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19410 AML5, ML5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.14G026200.1 AML5, ML5,... not classified & original description: pacid=50633473... 0.02 OrthoFinder output from all 47 species
Cre07.g338150 AML5, ML5 Protein MEI2-like 2 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
Ehy_g29294 AML5, ML5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000782001 AML5, ML5 Protein MEI2-like 2 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
GSVIVT01021379001 AML5, ML5 Protein MEI2-like 2 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
LOC_Os02g48790.1 AML5, ML5, LOC_Os02g48790 Protein MEI2-like 2 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Len_g01379 AML5, ML5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014636 AML5, ML5 not classified & original description: CDS=64-2772 0.02 OrthoFinder output from all 47 species
Smo91923 AML5, ML5 Protein MEI2-like 2 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004592 pantoate-beta-alanine ligase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0015939 pantothenate metabolic process IEP HCCA
BP GO:0015940 pantothenate biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR007201 Mei2-like_Rrm_C 770 866
IPR000504 RRM_dom 297 362
IPR000504 RRM_dom 212 276
No external refs found!