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  5. Sam_g13901

Sam_g13901


Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13901

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00117380 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog D... 0.03 OrthoFinder output from all 47 species
AMTR_s00085p00052820 CDC48A, CDC48,... Cell division cycle protein 48 homolog OS=Glycine max 0.02 OrthoFinder output from all 47 species
AT3G01610 emb1354, CDC48C cell division cycle 48C 0.04 OrthoFinder output from all 47 species
AT3G56690 CIP111 Cam interacting protein 111 0.02 OrthoFinder output from all 47 species
Adi_g000420 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080379 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07270 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20264 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33031 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05302 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G031700.1 Ceric.02G031700 platform ATPase CDC48 & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021463.10 No alias Cell division control protein 48 homolog D... 0.01 OrthoFinder output from all 47 species
GSVIVT01007689001 No alias Cell division cycle protein 48 homolog OS=Glycine max 0.02 OrthoFinder output from all 47 species
LOC_Os06g01980.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species
LOC_Os11g11340.1 CIP111, LOC_Os11g11340 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10429450g0010 No alias Cell division control protein 48 homolog D... 0.02 OrthoFinder output from all 47 species
Mp2g12350.1 emb1354, CDC48C Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp3g20500.1 CDC48B Cell division control protein 48 homolog B... 0.02 OrthoFinder output from all 47 species
Pnu_g16719 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17721 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12429 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g012190.3.1 CDC48B, Solyc05g012190 Cell division control protein 48 homolog B... 0.02 OrthoFinder output from all 47 species
Solyc06g074980.3.1 Solyc06g074980 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Spa_g04738 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g11219 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e021405_P001 CIP111, Zm00001e021405 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e035514_P002 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.04 OrthoFinder output from all 47 species
Zm00001e036688_P001 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
Zm00001e041158_P001 CDC48B, Zm00001e041158 Cell division control protein 48 homolog B... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 522 655
IPR003959 ATPase_AAA_core 249 378
IPR041569 AAA_lid_3 677 717
IPR041569 AAA_lid_3 401 443
IPR003338 CDC4_N-term_subdom 34 115
IPR004201 Cdc48_dom2 136 199
IPR015415 Vps4_C 736 768
No external refs found!