Sam_g13972


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g13972

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT3G16610 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g005749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018742 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033617 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g036520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099342 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09730 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06048 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14718 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17019 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38435 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06777 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19077 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19184 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24105 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38666 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g16798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28608 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g35556 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g43404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02505.t1 Aspi01Gene02505 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12038.t1 Aspi01Gene12038 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20358.t1 Aspi01Gene20358 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20498.t1 CRR2, Aspi01Gene20498 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene24209.t1 VAC1, ECB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48128.t1 Aspi01Gene48128 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001613 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: CDS=195-1385 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g016137 No alias not classified & original description: CDS=1-1566 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035815 No alias not classified & original description: CDS=1-2163 0.04 OrthoFinder output from all 47 species
Azfi_s0129.g048844 No alias not classified & original description: CDS=394-1995 0.03 OrthoFinder output from all 47 species
Azfi_s0332.g065427 No alias not classified & original description: CDS=1-3180 0.04 OrthoFinder output from all 47 species
Azfi_s0544.g076391 No alias not classified & original description: CDS=1-906 0.02 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.02 OrthoFinder output from all 47 species
Cba_g00281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19555 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g25710 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67809 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G019000.1 Ceric.02G019000 not classified & original description: pacid=50585115... 0.04 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.20G079700.1 DOT4, Ceric.20G079700 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.35G015500.1 Ceric.35G015500 not classified & original description: pacid=50580909... 0.03 OrthoFinder output from all 47 species
Ceric.35G035600.1 Ceric.35G035600 not classified & original description: pacid=50580802... 0.03 OrthoFinder output from all 47 species
Dac_g08179 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44414 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14626 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36025 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45110 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47669 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22625 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03091 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09249 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10023 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19509 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01018262001 No alias Pentatricopeptide repeat-containing protein At2g44880... 0.02 OrthoFinder output from all 47 species
LOC_Os01g72049.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
LOC_Os07g15570.1 CRR2, LOC_Os07g15570 Pentatricopeptide repeat-containing protein At2g46050,... 0.02 OrthoFinder output from all 47 species
LOC_Os08g37520.1 LOC_Os08g37520 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
LOC_Os12g15460.1 LOC_Os12g15460 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Len_g05348 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13048 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26318 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26319 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g37832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g53456 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g06349 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g18759 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g19707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g34514 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34536 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g41131 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g47992 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g01899 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17481 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16345 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57531 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57946 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30091 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06412 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g45369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g52997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61252 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61309 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61597 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002433 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009681 No alias not classified & original description: CDS=1-2907 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g012042 No alias not classified & original description: CDS=1-3273 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020289 No alias not classified & original description: CDS=1-1509 0.03 OrthoFinder output from all 47 species
Sam_g17721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25357 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g25628 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36326 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g39472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo76175 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Spa_g01746 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g14009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14318 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g14596 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15467 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g17487 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g19938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20177 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22684 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27926 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g47078 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50395 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06639 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g26445 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g29781 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g43995 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g44634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020567_P001 Zm00001e020567 RNA editing factor (MEF7) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 178 221
IPR002885 Pentatricopeptide_repeat 254 279
IPR002885 Pentatricopeptide_repeat 50 73
IPR002885 Pentatricopeptide_repeat 152 174
No external refs found!