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  5. Sam_g14005

Sam_g14005


Description : subfamily ABCC transporter & original description: none


Gene families : OG0000037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14005

Target Alias Description ECC score Gene Family Method Actions
Als_g35463 ABCC12, MRP13, ATMRP13 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11357 MRP6, ATMRP6, ABCC8 subfamily ABCC transporter & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13119.t1 MRP11, ABCC13,... subfamily ABCC transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16912.t1 MRP9, ABCC9,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013359 ATABCC5, MRP5,... subfamily ABCC transporter & original description: CDS=377-4993 0.04 OrthoFinder output from all 47 species
Gb_36600 MRP10, ATMRP10, ABCC14 subfamily ABCC transporter 0.04 OrthoFinder output from all 47 species
Gb_37462 ABCC3, ATMRP3, MRP3 subfamily ABCC transporter 0.03 OrthoFinder output from all 47 species
Lfl_g14968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434414g0010 ABCC1, ATABCC1,... ABC transporter C family member 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_685468g0010 AtABCC2, ABCC2,... ABC transporter C family member 2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_73579g0010 ABCC12, MRP13, ATMRP13 ABC transporter C family member 11 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_837292g0010 ATABCC5, MRP5,... ABC transporter C family member 5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g14395 MRP10, ATMRP10, ABCC14 subfamily ABCC transporter & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g37642 EST3, MRP4, ATMRP4, ABCC4 subfamily ABCC transporter & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003781 ATABCC5, MRP5,... subfamily ABCC transporter & original description: CDS=314-4942 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010393 MRP11, ABCC13, ATMRP11 subfamily ABCC transporter & original description: CDS=2-4279 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017297 ATMRP12, MRP12, ABCC11 subfamily ABCC transporter & original description: CDS=111-3830 0.02 OrthoFinder output from all 47 species
Smo405957 AtABCC2, ABCC2,... ABC transporter C family member 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc10g019270.3.1 MRP15, ABCC15,... Putative ABC transporter C family member 15... 0.02 OrthoFinder output from all 47 species
Zm00001e034301_P001 ABCC3, ATMRP3,... subfamily ABCC transporter 0.02 OrthoFinder output from all 47 species
Zm00001e041396_P001 MRP9, ABCC9,... ABC transporter C family member 9 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 309 577
IPR011527 ABC1_TM_dom 930 1172
IPR003439 ABC_transporter-like_ATP-bd 1266 1413
IPR003439 ABC_transporter-like_ATP-bd 649 783
No external refs found!