Sam_g14281


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g14281

Target Alias Description ECC score Gene Family Method Actions
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004459 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g014778 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g053729 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069068 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098989 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18096 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23848 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g29185 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g44680 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g30861 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05010 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07100 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g17656 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19301 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23795 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34698.t1 Aspi01Gene34698 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56635.t1 Aspi01Gene56635 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015651 No alias not classified & original description: CDS=67-2907 0.04 OrthoFinder output from all 47 species
Azfi_s0083.g038857 No alias not classified & original description: CDS=1-2421 0.03 OrthoFinder output from all 47 species
Azfi_s0126.g048644 No alias not classified & original description: CDS=1-2160 0.04 OrthoFinder output from all 47 species
Cba_g06233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19771 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67460 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06971 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g37678 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g09208 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13442 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15555 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22168 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23809 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23999 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26440 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46457 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g47764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01030836001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os02g46980.1 LOC_Os02g46980 Pentatricopeptide repeat-containing protein At1g31920... 0.02 OrthoFinder output from all 47 species
Len_g05377 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07430 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08416 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14946 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g17485 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g36409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43705 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g36314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01302 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02370 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g27115 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27204 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30445 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03428 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13015 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13456 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g35144 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g43620 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g52500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63879 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07950 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15312 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15474 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16172 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16177 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23600 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29797 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30095 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g33734 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11000 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59836 EMB2758 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008323 No alias not classified & original description: CDS=476-3628 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010017 No alias not classified & original description: CDS=111-3410 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010154 No alias not classified & original description: CDS=1-2595 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015358 No alias not classified & original description: CDS=223-2631 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016059 No alias not classified & original description: CDS=25-3486 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0244.g026675 No alias not classified & original description: CDS=1-1575 0.02 OrthoFinder output from all 47 species
Sam_g12346 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.02 OrthoFinder output from all 47 species
Spa_g10971 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g16702 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23933 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26279 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g28099 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44998 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03388 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27708 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30123 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g34840 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001038_P001 CRR2, Zm00001e001038 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
Zm00001e039305_P001 Zm00001e039305 RNA editing factor (MEF13) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 170 193
IPR002885 Pentatricopeptide_repeat 272 294
IPR002885 Pentatricopeptide_repeat 373 395
IPR002885 Pentatricopeptide_repeat 195 242
IPR002885 Pentatricopeptide_repeat 297 343
No external refs found!