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  5. Sam_g15522

Sam_g15522


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15522

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00218280 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.04 OrthoFinder output from all 47 species
Adi_g005702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g007536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014778 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034273 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g035621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066611 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067925 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g076457 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085510 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g095327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097231 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23915 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g42949 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16602 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17191 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35882 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05672 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07079 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22355 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g40546 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68927 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07941.t1 LPA66, Aspi01Gene07941 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11731.t1 Aspi01Gene11731 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13980.t1 Aspi01Gene13980 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14090.t1 Aspi01Gene14090 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17591.t1 Aspi01Gene17591 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19500.t1 Aspi01Gene19500 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25447.t1 Aspi01Gene25447 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28610.t1 REME1, Aspi01Gene28610 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34523.t1 Aspi01Gene34523 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene35048.t1 Aspi01Gene35048 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38545.t1 Aspi01Gene38545 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene52571.t1 Aspi01Gene52571 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene62647.t1 Aspi01Gene62647 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66850.t1 Aspi01Gene66850 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71957.t1 EMB2261, Aspi01Gene71957 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02701 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07158 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g12399 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15873 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20438 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36071 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g45697 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G018600.1 Ceric.01G018600 not classified & original description: pacid=50592052... 0.04 OrthoFinder output from all 47 species
Ceric.09G009700.1 Ceric.09G009700 not classified & original description: pacid=50587563... 0.04 OrthoFinder output from all 47 species
Ceric.13G011700.1 Ceric.13G011700 not classified & original description: pacid=50636754... 0.02 OrthoFinder output from all 47 species
Ceric.18G000100.1 CRR22, Ceric.18G000100 ssDNA-binding protein *(OSB) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.22G072200.1 Ceric.22G072200 not classified & original description: pacid=50614353... 0.03 OrthoFinder output from all 47 species
Ceric.22G078800.1 Ceric.22G078800 not classified & original description: pacid=50613807... 0.02 OrthoFinder output from all 47 species
Ceric.23G060300.1 CRR22, Ceric.23G060300 not classified & original description: pacid=50610371... 0.02 OrthoFinder output from all 47 species
Ceric.26G035200.1 Ceric.26G035200 not classified & original description: pacid=50599772... 0.02 OrthoFinder output from all 47 species
Ceric.31G032400.1 CRR22, Ceric.31G032400 not classified & original description: pacid=50574168... 0.02 OrthoFinder output from all 47 species
Ceric.32G058000.1 Ceric.32G058000 not classified & original description: pacid=50598467... 0.02 OrthoFinder output from all 47 species
Ceric.33G060200.1 Ceric.33G060200 not classified & original description: pacid=50607485... 0.03 OrthoFinder output from all 47 species
Ceric.34G047900.1 Ceric.34G047900 not classified & original description: pacid=50622720... 0.02 OrthoFinder output from all 47 species
Dac_g09645 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g37875 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21154 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g12101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g19712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21664 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22591 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g24430 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g38119 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01000178001 No alias RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01017365001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01021756001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species
LOC_Os01g45840.1 LOC_Os01g45840 Pentatricopeptide repeat-containing protein At2g36730... 0.03 OrthoFinder output from all 47 species
LOC_Os03g44210.2 LOC_Os03g44210 RNA editing factor (SEL1/PDM1) 0.02 OrthoFinder output from all 47 species
LOC_Os03g55840.1 LOC_Os03g55840 Pentatricopeptide repeat-containing protein DWY1,... 0.02 OrthoFinder output from all 47 species
Len_g34160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g44590 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25262 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g39398 CRR21 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g04397 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g29119 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g30793 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32070 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12697 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g23541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g32012 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13584 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g56283 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63623 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63853 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63866 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10348 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22095 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33573 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006530 No alias not classified & original description: CDS=1-570 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011483 No alias not classified & original description: CDS=1-2124 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013917 No alias not classified & original description: CDS=1-2493 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019330 No alias not classified & original description: CDS=1-2295 0.04 OrthoFinder output from all 47 species
Sam_g16320 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17518 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g37702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39339 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo100938 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
Smo173093 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Spa_g09894 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05621 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10281 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17314 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g39811 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44227 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029819_P003 CRR22, Zm00001e029819 RNA editing factor (CRR22) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP HCCA
MF GO:0004134 4-alpha-glucanotransferase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008172 S-methyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 610 672
IPR002885 Pentatricopeptide_repeat 290 332
IPR002885 Pentatricopeptide_repeat 493 540
IPR002885 Pentatricopeptide_repeat 189 237
IPR002885 Pentatricopeptide_repeat 391 438
IPR002885 Pentatricopeptide_repeat 568 592
IPR002885 Pentatricopeptide_repeat 164 186
IPR032867 DYW_dom 714 800
No external refs found!