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  5. Sam_g15685

Sam_g15685


Description : CMF transcription factor & original description: none


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15685

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 CIA2,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AMTR_s00073p00061640 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Adi_g021795 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05448 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g34755 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g09487 No alias BBX class-III transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20220 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G076600.1 Ceric.16G076600 not classified & original description: pacid=50589566... 0.03 OrthoFinder output from all 47 species
Cre15.g635100 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g23913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06850 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07785 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010855001 CIA2 RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01024661001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
LOC_Os02g49880.1 LOC_Os02g49880 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
LOC_Os03g50310.1 LOC_Os03g50310 transcription factor (BBX-CO) 0.05 OrthoFinder output from all 47 species
Len_g23704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g06124 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06152 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g14113 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16447 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14853 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19039 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g18432 No alias CMF transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g60427 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007602 No alias not classified & original description: CDS=193-1710 0.02 OrthoFinder output from all 47 species
Smo438000 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Solyc05g009310.3.1 Solyc05g009310 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Solyc07g008540.3.1 CIA2, Solyc07g008540 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Tin_g13911 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20168 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012194_P001 Zm00001e012194 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Zm00001e036760_P001 Zm00001e036760 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 787 829
No external refs found!