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  5. Sam_g15799

Sam_g15799


Description : bHLH-type transcription factor & original description: none


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15799

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00138470 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
AMTR_s00071p00111940 HEC2,... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
AT1G35460 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g09029 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12396 HEC1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21168 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013357 No alias bHLH-type transcription factor & original description: CDS=1-633 0.03 OrthoFinder output from all 47 species
Cba_g42588 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.39G010000.1 LRL3, Ceric.39G010000 bHLH-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Dcu_g03880 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013553001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01026056001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01031338001 PIF3, POC1, PAP3 External stimuli response.light.red/far red light.PIF... 0.02 OrthoFinder output from all 47 species
LOC_Os03g51910.1 LOC_Os03g51910 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Len_g13668 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g17350.1 SPT transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Nbi_g11326 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43162 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Pnu_g33766 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo443113 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Spa_g03670 RSL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g23827 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003624_P003 Zm00001e003624 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e005554_P001 Zm00001e005554 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e017430_P001 PIF3, POC1,... transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e019392_P001 Zm00001e019392 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e035219_P001 Zm00001e035219 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 353 399
No external refs found!