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  5. Sam_g15961

Sam_g15961


Description : not classified & original description: none


Gene families : OG0006152 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006152_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g15961
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00252360 evm_27.TU.AmTr_v1... Thylakoid lumenal protein TL20.3, chloroplastic... 0.02 OrthoFinder output from all 47 species
Adi_g015162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08842 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.20G040100.1 Ceric.20G040100 not classified & original description: pacid=50565962... 0.05 OrthoFinder output from all 47 species
Dcu_g06102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01001267001 No alias Thylakoid lumenal protein TL20.3, chloroplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os02g42960.1 LOC_Os02g42960 Thylakoid lumenal protein TL20.3, chloroplastic... 0.03 OrthoFinder output from all 47 species
Len_g28816 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g07925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g05641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18142 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16845 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001784 No alias not classified & original description: CDS=1-996 0.04 OrthoFinder output from all 47 species
Spa_g08899 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18697 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10553 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR001646 5peptide_repeat 164 199
IPR001646 5peptide_repeat 97 136
No external refs found!