Sam_g16000

Description : not classified & original description: none

Gene families : OG0006425 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006425_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g16000
Cluster	HCCA: Cluster_55

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00048p00155800	RSH3, AT-RSH3,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.03	OrthoFinder output from all 47 species
Adi_g058991	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g14803	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g03228	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g06745	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g12674	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g25362	AT-RSH2, ATRSH2, RSH2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01024422001	RSH3, AT-RSH3, ATRSH3	Probable GTP diphosphokinase RSH3, chloroplastic...	0.03	OrthoFinder output from all 47 species
Gb_38498	RSH3, AT-RSH3, ATRSH3	Probable GTP diphosphokinase RSH3, chloroplastic...	0.02	OrthoFinder output from all 47 species
LOC_Os02g47120.1	RSH3, AT-RSH3,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.03	OrthoFinder output from all 47 species
Len_g02422	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g06720	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g26312	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g03900	RSH3, AT-RSH3, ATRSH3	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g15926	AT-RSH2, ATRSH2, RSH2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g60266	AT-RSH2, ATRSH2, RSH2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e023299_P002	RSH3, AT-RSH3,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007685	RelA_SpoT	450	569

External Links

No external refs found!

Sam_g16000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation