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  5. Sam_g16160

Sam_g16160


Description : component *(NRPC2) of RNA polymerase III complex & original description: none


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16160
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AT5G45140 NRPC2 nuclear RNA polymerase C2 0.05 OrthoFinder output from all 47 species
Aev_g01571 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Als_g02614 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Ceric.05G021300.1 EMB1989, RPB2,... component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Ceric.30G032600.1 NRPC2, Ceric.30G032600 component *(NRPC2) of RNA polymerase III complex &... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.9 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.124 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre12.g542800 NRPC2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 OrthoFinder output from all 47 species
GSVIVT01036596001 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_05262 NRPC2 subunit 2 of Pol III RNA polymerase 0.03 OrthoFinder output from all 47 species
LOC_Os04g54840.1 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.02 OrthoFinder output from all 47 species
Lfl_g04274 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Mp5g21260.1 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.01 OrthoFinder output from all 47 species
Mp6g06170.1 NRPC2 subunit 2 of Pol III RNA polymerase 0.02 OrthoFinder output from all 47 species
Pnu_g00855 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Smo443461 NRPC2 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
Solyc02g078260.3.1 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.02 OrthoFinder output from all 47 species
Solyc03g110880.4.1 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.02 OrthoFinder output from all 47 species
Solyc10g078860.2.1 NRPC2, Solyc10g078860 subunit 2 of Pol III RNA polymerase 0.03 OrthoFinder output from all 47 species
Spa_g04426 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e005007_P001 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004807 triose-phosphate isomerase activity IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007646 RNA_pol_Rpb2_4 545 605
IPR007645 RNA_pol_Rpb2_3 444 508
IPR007641 RNA_pol_Rpb2_7 1059 1149
IPR007642 RNA_pol_Rpb2_2 189 368
IPR007644 RNA_pol_bsu_protrusion 35 414
IPR007120 DNA-dir_RNAP_su2_dom 674 1057
IPR007647 RNA_pol_Rpb2_5 627 664
No external refs found!