Sam_g16161


Description : not classified & original description: none


Gene families : OG0004502 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004502_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16161

Target Alias Description ECC score Gene Family Method Actions
Ala_g12948 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre02.g089274 No alias Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Mp3g01880.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Ore_g05013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56938 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g056570.3.1 Solyc01g056570 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:1990380 K48-linked deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 200 255
IPR000408 Reg_chr_condens 311 361
IPR000408 Reg_chr_condens 259 307
IPR000408 Reg_chr_condens 150 197
IPR002110 Ankyrin_rpt 27 122
No external refs found!