1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g16456

Sam_g16456


Description : photosynthetic acclimation APE acclimation factor & original description: none


Gene families : OG0005042 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005042_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16456

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00015p00103810 APE1,... Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
AT5G38660 APE1 acclimation of photosynthesis to environment 0.03 OrthoFinder output from all 47 species
Adi_g042602 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
Aev_g05820 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
Ala_g01434 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
Als_g04161 APE1 photosynthetic acclimation APE acclimation factor &... 0.07 OrthoFinder output from all 47 species
Aob_g11675 APE1 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Aop_g00474 APE1 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene37157.t1 APE1, Aspi01Gene37157 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Azfi_s0022.g016149 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
Cba_g36758 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
Ceric.36G020000.1 APE1, Ceric.36G020000 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.155 APE1 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder output from all 47 species
Cre16.g665250 APE1 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Dac_g08395 APE1 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Dcu_g15090 APE1 photosynthetic acclimation APE acclimation factor &... 0.07 OrthoFinder output from all 47 species
Dde_g12570 APE1 photosynthetic acclimation APE acclimation factor &... 0.02 OrthoFinder output from all 47 species
Ehy_g07374 APE1 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
GSVIVT01036442001 APE1 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Gb_11215 APE1 photosynthetic acclimation APE acclimation factor 0.04 OrthoFinder output from all 47 species
LOC_Os08g27010.1 APE1, LOC_Os08g27010 photosynthetic acclimation APE acclimation factor 0.06 OrthoFinder output from all 47 species
Len_g00377 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
Lfl_g00668 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
Mp1g12820.1 APE1 photosynthetic acclimation APE acclimation factor 0.02 OrthoFinder output from all 47 species
Msp_g00353 APE1 photosynthetic acclimation APE acclimation factor &... 0.06 OrthoFinder output from all 47 species
Nbi_g30376 APE1 photosynthetic acclimation APE acclimation factor &... 0.07 OrthoFinder output from all 47 species
Ore_g17711 APE1 photosynthetic acclimation APE acclimation factor &... 0.03 OrthoFinder output from all 47 species
Pir_g12433 APE1 photosynthetic acclimation APE acclimation factor &... 0.09 OrthoFinder output from all 47 species
Pir_g59760 APE1 photosynthetic acclimation APE acclimation factor &... 0.03 OrthoFinder output from all 47 species
Ppi_g32168 APE1 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016876 APE1 photosynthetic acclimation APE acclimation factor &... 0.04 OrthoFinder output from all 47 species
Solyc03g034170.4.1 APE1, Solyc03g034170 photosynthetic acclimation APE acclimation factor 0.06 OrthoFinder output from all 47 species
Spa_g11785 APE1 photosynthetic acclimation APE acclimation factor &... 0.05 OrthoFinder output from all 47 species
Tin_g12102 APE1 photosynthetic acclimation APE acclimation factor &... 0.07 OrthoFinder output from all 47 species
Zm00001e004293_P003 APE1, Zm00001e004293 photosynthetic acclimation APE acclimation factor 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR021275 DUF2854 101 251
No external refs found!