Sam_g16549


Description : ssDNA-binding protein *(OSB) & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16549

Target Alias Description ECC score Gene Family Method Actions
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G62890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g036750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g068895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g20571 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g23948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g27991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g46569 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12481 OTP82 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g22076 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g23789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24718 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27276 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31812 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35854 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36192 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36539 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05713 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07351 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07500 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g25462 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05937 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07895 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g14363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22581 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24224 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37587 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40045 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02808 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g03408 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g17692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36072 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38090 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene05393.t1 Aspi01Gene05393 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61522.t1 OTP84, Aspi01Gene61522 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71401.t1 REME1, Aspi01Gene71401 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0010.g012359 No alias EC_3.4 hydrolase acting on peptide bond (peptidase) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0117.g046569 No alias not classified & original description: CDS=1-2520 0.06 OrthoFinder output from all 47 species
Cba_g05272 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20713 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29504 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g30808 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G048900.1 Ceric.04G048900 ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.13G076400.1 Ceric.13G076400 not classified & original description: pacid=50635248... 0.03 OrthoFinder output from all 47 species
Ceric.15G056400.1 Ceric.15G056400 not classified & original description: pacid=50639467... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.101 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g02827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g05194 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g25263 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30041 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07693 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g17044 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g19456 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26847 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38468 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38525 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47862 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13146 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20812 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21131 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g24725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003766001 LPA66 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
GSVIVT01033735001 emb1899, EMB175, EMB166 Pentatricopeptide repeat-containing protein At5g03800... 0.04 OrthoFinder output from all 47 species
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.03 OrthoFinder output from all 47 species
LOC_Os06g47920.1 LOC_Os06g47920 Pentatricopeptide repeat-containing protein At5g44230... 0.02 OrthoFinder output from all 47 species
Len_g04809 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05407 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33974 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44381 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g50232 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54669 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g55568 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10277392g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
Msp_g26486 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28226 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g33344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g40822 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41118 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04467 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11260 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g13680 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g21358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g25173 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g32051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32191 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25436 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26038 EMB2261 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g08797 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g64858 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g04545 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15871 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23074 LPA66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g23599 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30107 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g30780 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03245 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06977 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g36011 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g40150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g49219 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53548 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001330 No alias not classified & original description: CDS=1-3081 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002433 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005803 No alias not classified & original description: CDS=32-2446 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013488 No alias not classified & original description: CDS=1-3012 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015411 No alias not classified & original description: CDS=1-3726 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0076.g017463 No alias not classified & original description: CDS=1-2316 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019756 No alias not classified & original description: CDS=1-2544 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023182 No alias not classified & original description: CDS=1-4812 0.02 OrthoFinder output from all 47 species
Sam_g06265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g07814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11848 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g12011 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g12346 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g12390 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13564 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13864 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g13891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21944 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g22472 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g22475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24543 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g24878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25159 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25324 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g25325 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g25352 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26236 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27765 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28438 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g28758 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g33599 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g33616 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g35987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37213 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g37508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40204 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g46652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g50768 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g50908 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo171135 OTP84 Pentatricopeptide repeat-containing protein At3g03580... 0.04 OrthoFinder output from all 47 species
Smo92456 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Spa_g14545 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g33278 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33770 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44644 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45620 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55549 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g57153 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06389 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09254 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12193 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g12955 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14912 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17147 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g18426 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g35267 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e007597_P001 Zm00001e007597 Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Zm00001e022858_P001 Zm00001e022858 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
Zm00001e041694_P001 Zm00001e041694 Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 153 180
IPR002885 Pentatricopeptide_repeat 125 147
No external refs found!