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  5. Sam_g16722

Sam_g16722


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000374 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000374_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16722

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00189960 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Aev_g07976 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ala_g10098 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Als_g52751 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aop_g04919 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aop_g26944 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene04581.t1 Aspi01Gene04581 RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene11118.t2 Aspi01Gene11118 regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.03 OrthoFinder output from all 47 species
Aspi01Gene21412.t1 Aspi01Gene21412 RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cba_g36468 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.26G008400.1 Ceric.26G008400 RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dcu_g11908 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.02 OrthoFinder output from all 47 species
Dde_g10602 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.02 OrthoFinder output from all 47 species
Ehy_g31158 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
LOC_Os05g48970.1 LOC_Os05g48970 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Len_g29893 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
MA_10430240g0020 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Mp1g11510.1 No alias Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Ore_g32526 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g19562 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g03232 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Solyc01g107930.3.1 Solyc01g107930 E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc10g050170.3.1 Solyc10g050170 E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc12g014070.2.1 Solyc12g014070 Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Solyc12g088740.2.1 Solyc12g088740 Probable E3 ubiquitin-protein ligase RHG1A... 0.03 OrthoFinder output from all 47 species
Solyc12g096420.2.1 Solyc12g096420 Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006865 amino acid transport IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:1903825 organic acid transmembrane transport IEP HCCA
BP GO:1905039 carboxylic acid transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 698 740
No external refs found!