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  5. Sam_g16823

Sam_g16823


Description : RNA helicase Prp43 of Intron-Lariat Spliceosome complex & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g16823

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00154740 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
AT1G26370 No alias RNA helicase family protein 0.02 OrthoFinder output from all 47 species
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.02 OrthoFinder output from all 47 species
AT2G47250 No alias RNA helicase family protein 0.03 OrthoFinder output from all 47 species
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.02 OrthoFinder output from all 47 species
AT3G62310 No alias RNA helicase family protein 0.03 OrthoFinder output from all 47 species
Adi_g060167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11422 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g27800 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02597 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38553 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01897 No alias RNA helicase *(Prp22) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13922 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene09277.t1 Aspi01Gene09277 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13014 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.01G059500.1 Ceric.01G059500 not classified & original description: pacid=50591809... 0.02 OrthoFinder output from all 47 species
Ceric.04G078700.1 Ceric.04G078700 not classified & original description: pacid=50630845... 0.03 OrthoFinder output from all 47 species
Ceric.15G036900.1 Ceric.15G036900 RNA helicase *(Prp22) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G075900.1 EMB3011, Ceric.21G075900 RNA helicase *(Prp16) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.25G032700.1 Ceric.25G032700 RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.05 OrthoFinder output from all 47 species
Ceric.34G064900.1 Ceric.34G064900 not classified & original description: pacid=50623889... 0.02 OrthoFinder output from all 47 species
Ceric.37G064800.1 ESP3, EMB2733,... RNA helicase *(Prp2) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.25 No alias RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Cre07.g329150 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder output from all 47 species
Cre07.g349100 ESP3, EMB2733 RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder output from all 47 species
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Cre11.g467654 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Dac_g11433 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Dac_g20233 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g20664 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Dcu_g22478 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g42294 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.05 OrthoFinder output from all 47 species
Ehy_g25246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_13411 EMB3011 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
LOC_Os02g19860.1 LOC_Os02g19860 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
LOC_Os08g24760.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
LOC_Os11g20554.1 LOC_Os11g20554 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Len_g09738 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05720 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428112g0030 FAS4, ATFAS4 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_277016g0010 ESP3, EMB2733 RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Mp4g16380.1 ESP3, EMB2733 RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Mp7g03460.1 EMB3011 RNA helicase (Prp16) 0.03 OrthoFinder output from all 47 species
Msp_g14081 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07572 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g21732 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42980 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42990 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g07808 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Pir_g10948 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g66576 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17516 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g008120.4.1 Solyc09g008120 RNA helicase (Prp22) 0.02 OrthoFinder output from all 47 species
Solyc10g076910.2.1 EMB3011, Solyc10g076910 RNA helicase (Prp16) 0.04 OrthoFinder output from all 47 species
Tin_g01282 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02106 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Tin_g02893 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010450_P001 EMB3011, Zm00001e010450 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Zm00001e014112_P001 Zm00001e014112 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Zm00001e016478_P002 Zm00001e016478 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Zm00001e022095_P001 ESP3, EMB2733,... RNA helicase (Prp2) 0.07 OrthoFinder output from all 47 species
Zm00001e028404_P001 Zm00001e028404 RNA helicase (Prp22) 0.03 OrthoFinder output from all 47 species
Zm00001e036358_P005 Zm00001e036358 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0042274 ribosomal small subunit biogenesis IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 604 680
IPR001650 Helicase_C 260 391
IPR011545 DEAD/DEAH_box_helicase_dom 61 213
IPR007502 Helicase-assoc_dom 454 542
No external refs found!