Sam_g17237

Description : regulatory component *(RPT5) of 26S proteasome & original description: none

Gene families : OG0003325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003325_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g17237

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00104360	RPT5A, ATS6A.2,...	Protein degradation.26S proteasome.regulatory...	0.02	OrthoFinder output from all 47 species
Adi_g008732	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Cre10.g439150	RPT5A, ATS6A.2	Protein degradation.26S proteasome.regulatory...	0.03	OrthoFinder output from all 47 species
LOC_Os02g56000.1	RPT5A, ATS6A.2,...	regulatory component RPT5 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Lfl_g26943	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Tin_g01827	RPT5A, ATS6A.2	regulatory component *(RPT5) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	HCCA
CC	GO:0000781	chromosome, telomeric region	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
CC	GO:0098687	chromosomal region	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	365	409
IPR003959	ATPase_AAA_core	210	342
IPR032501	Prot_ATP_ID_OB_C	76	152

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