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  5. Sam_g17282

Sam_g17282


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17282

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00182540 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00230160 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.02 OrthoFinder output from all 47 species
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G03880 REME1 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g005606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005743 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034273 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g034364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060858 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g06254 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21708 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g24838 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27909 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05010 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07446 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g62017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12064 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28195 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37946 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09092 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16410 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20429 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28688 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36477 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02798.t1 Aspi01Gene02798 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene10966.t1 Aspi01Gene10966 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17383.t1 OTP84, Aspi01Gene17383 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18627.t1 Aspi01Gene18627 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24054.t1 OTP82, Aspi01Gene24054 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27883.t1 Aspi01Gene27883 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34133.t1 Aspi01Gene34133 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34615.t1 Aspi01Gene34615 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37733.t1 Aspi01Gene37733 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46912.t1 Aspi01Gene46912 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60910.t1 Aspi01Gene60910 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62647.t1 Aspi01Gene62647 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene64480.t1 Aspi01Gene64480 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65088.t1 Aspi01Gene65088 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65182.t1 OTP86, Aspi01Gene65182 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene67320.t1 EMB2758, Aspi01Gene67320 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene70275.t1 Aspi01Gene70275 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72349.t1 EMB2758, Aspi01Gene72349 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015813 No alias not classified & original description: CDS=355-3027 0.03 OrthoFinder output from all 47 species
Azfi_s0652.g081079 No alias not classified & original description: CDS=1-2169 0.03 OrthoFinder output from all 47 species
Cba_g04042 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05882 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15873 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19561 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29648 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g58405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g67785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g68679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z110500.1 Ceric.1Z110500 not classified & original description: pacid=50639205... 0.03 OrthoFinder output from all 47 species
Ceric.28G001700.1 Ceric.28G001700 not classified & original description: pacid=50570577... 0.03 OrthoFinder output from all 47 species
Dac_g23468 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07693 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08424 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g30334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g24017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.03 OrthoFinder output from all 47 species
Len_g04746 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g08128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18873 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g33284 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g40128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g00845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_184088g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
Msp_g27109 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g31349 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31656 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g24441 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30620 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g47516 OTP85 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003168 CRR22 not classified & original description: CDS=1-2031 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008229 No alias not classified & original description: CDS=1-3597 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0143.g022894 No alias not classified & original description: CDS=1-2625 0.02 OrthoFinder output from all 47 species
Sam_g11848 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17518 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g38692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo118230 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Smo131170 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Smo91949 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Spa_g27577 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26504 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 3 50
No external refs found!