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  5. Sam_g17895

Sam_g17895


Description : circadian clock activation factor *(LWD) & original description: none


Gene families : OG0002975 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002975_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17895

Target Alias Description ECC score Gene Family Method Actions
Adi_g020325 LWD1, ATAN11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07093 LWD1, ATAN11 circadian clock activation factor *(LWD) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os02g45810.1 ATTTG1, TTG,... Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_637135g0010 LWD1, ATAN11 LWD circadian clock activation factor 0.03 OrthoFinder output from all 47 species
Pp3c21_21010V3.1 LWD1, ATAN11,... Transducin/WD40 repeat-like superfamily protein 0.01 OrthoFinder output from all 47 species
Solyc03g097340.1.1 ATTTG1, TTG,... Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 255 291
IPR001680 WD40_repeat 169 200
No external refs found!