Sam_g17902


Description : not classified & original description: none


Gene families : OG0000410 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000410_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g17902

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00065520 evm_27.TU.AmTr_v1... Ricin B-like lectin R40G3 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
AT2G39050 No alias hydroxyproline-rich glycoprotein family protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene13294.t1 Aspi01Gene13294 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene33850.t1 Aspi01Gene33850 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36366.t1 Aspi01Gene36366 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G019700.1 Ceric.01G019700 not classified & original description: pacid=50591467... 0.03 OrthoFinder output from all 47 species
Ceric.1Z112300.1 Ceric.1Z112300 not classified & original description: pacid=50583677... 0.02 OrthoFinder output from all 47 species
Len_g03595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g56736 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07573 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0143.g022886 No alias not classified & original description: CDS=91-789 0.03 OrthoFinder output from all 47 species
Spa_g15270 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010991_P001 Zm00001e010991 Ricin B-like lectin R40C1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!