Sam_g18488


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g18488

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00240190 evm_27.TU.AmTr_v1... Cell cycle.organelle machineries.DNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00041p00129840 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.02 OrthoFinder output from all 47 species
AT5G44785 OSB3 organellar single-stranded DNA binding protein 3 0.02 OrthoFinder output from all 47 species
Adi_g003839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005800 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g108175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g109057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g40807 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g43288 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g31162 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33929 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32548 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g30148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36874 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37112 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07081 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16691 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g35556 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g67892 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69406 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene03740.t1 Aspi01Gene03740 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10220.t1 OTP84, Aspi01Gene10220 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15587.t1 DOT4, Aspi01Gene15587 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene17591.t1 Aspi01Gene17591 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22875.t1 Aspi01Gene22875 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31476.t1 Aspi01Gene31476 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010932 REME1 not classified & original description: CDS=1-1479 0.02 OrthoFinder output from all 47 species
Azfi_s0045.g029919 No alias not classified & original description: CDS=1-2448 0.02 OrthoFinder output from all 47 species
Azfi_s0081.g038640 OTP86 not classified & original description: CDS=63-2522 0.02 OrthoFinder output from all 47 species
Azfi_s0231.g059276 No alias not classified & original description: CDS=103-2055 0.03 OrthoFinder output from all 47 species
Cba_g10212 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13415 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g18809 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g24774 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67809 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.20G040700.1 Ceric.20G040700 not classified & original description: pacid=50566494... 0.03 OrthoFinder output from all 47 species
Ceric.22G077500.1 Ceric.22G077500 not classified & original description: pacid=50615168... 0.03 OrthoFinder output from all 47 species
Ceric.34G039000.1 Ceric.34G039000 not classified & original description: pacid=50623583... 0.02 OrthoFinder output from all 47 species
Ceric.36G048100.1 Ceric.36G048100 not classified & original description: pacid=50568569... 0.03 OrthoFinder output from all 47 species
Dac_g21997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g34941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g16805 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g21350 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g35843 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38441 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43122 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g43169 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g07956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16466 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g21648 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23491 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23605 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g24873 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25197 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g27024 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g30034 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g47958 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01030836001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
GSVIVT01033190001 OTP82 Pentatricopeptide repeat-containing protein At5g66520... 0.03 OrthoFinder output from all 47 species
LOC_Os01g10800.1 DOT4, LOC_Os01g10800 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
LOC_Os02g49830.1 LOC_Os02g49830 Pentatricopeptide repeat-containing protein At3g22690... 0.02 OrthoFinder output from all 47 species
Len_g05419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g07979 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g08875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18528 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18947 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18973 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g25721 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g26141 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g36220 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07116 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g32919 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g13610 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g22928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28215 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41356 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44820 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g45004 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04945 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06230 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07924 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10028 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13578 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27636 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g27639 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g32355 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g38647 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g41721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02390 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15249 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g26958 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g43611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13262 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13627 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57712 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63812 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g63895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16163 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29837 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05062 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13232 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16308 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53175 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53563 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53730 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56302 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61249 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001739 No alias not classified & original description: CDS=1-1443 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004479 No alias not classified & original description: CDS=197-3106 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009138 No alias component *(NRPC16/RPC34) of TFIIIe transcription factor... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013068 No alias not classified & original description: CDS=1-1464 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015029 No alias not classified & original description: CDS=1-2931 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015358 No alias not classified & original description: CDS=223-2631 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0126.g021770 EMB2758 not classified & original description: CDS=1-1959 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021895 No alias not classified & original description: CDS=196-3294 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0244.g026675 No alias not classified & original description: CDS=1-1575 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0252.g026781 No alias not classified & original description: CDS=1-2700 0.04 OrthoFinder output from all 47 species
Sam_g17245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17711 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo105356 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
Smo106861 OTP82 Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
Smo30095 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
Smo61782 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Smo70183 OTP84 Pentatricopeptide repeat-containing protein At1g08070,... 0.03 OrthoFinder output from all 47 species
Solyc02g081900.4.1 OTP84, Solyc02g081900 RNA editing factor (OTP84) 0.03 OrthoFinder output from all 47 species
Solyc03g115800.1.1 Solyc03g115800 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc05g013200.1.1 OTP85, Solyc05g013200 RNA editing factor (OTP85) 0.02 OrthoFinder output from all 47 species
Spa_g01968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g04723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15468 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21942 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g42473 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g46731 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55537 DOT4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17314 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35682 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029819_P003 CRR22, Zm00001e029819 RNA editing factor (CRR22) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0032502 developmental process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 243 290
IPR002885 Pentatricopeptide_repeat 145 189
IPR002885 Pentatricopeptide_repeat 116 142
IPR002885 Pentatricopeptide_repeat 320 343
No external refs found!