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  5. Sam_g19042

Sam_g19042


Description : UBQ ubiquitin-fold protein & original description: none


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g19042

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00104050 evm_27.TU.AmTr_v1... Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris 0.02 OrthoFinder output from all 47 species
AT4G05320 UBQ10 polyubiquitin 10 0.03 OrthoFinder output from all 47 species
Ala_g21986 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27780 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26763 UBQ11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g38219 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23077.t1 UBQ4, Aspi01Gene23077 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27260.t1 UBQ10, Aspi01Gene27260 UBQ ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene57837.t1 UBQ10, Aspi01Gene57837 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g08634 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34959 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g43648 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g77310 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.24G048500.1 UBQ11, Ceric.24G048500 UBQ ubiquitin-fold protein & original description:... 0.03 OrthoFinder output from all 47 species
Cre07.g317050 No alias Polyubiquitin (Fragment) OS=Acetabularia peniculus 0.02 OrthoFinder output from all 47 species
Dde_g13903 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os10g39590.1 LOC_Os10g39590 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g29367 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Len_g29368 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Len_g36572 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g09233 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g17628 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g44397 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g41611 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04047 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26810 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c13_20060V3.1 Pp3c13_20060 ubiquitin 8 0.02 OrthoFinder output from all 47 species
Sam_g13156 No alias RUB ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Smo173723 UBQ10 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Smo228943 UBQ4 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Spa_g31029 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51054 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 155 226
IPR000626 Ubiquitin-like_dom 3 74
IPR000626 Ubiquitin-like_dom 307 378
IPR000626 Ubiquitin-like_dom 383 454
IPR000626 Ubiquitin-like_dom 79 150
IPR000626 Ubiquitin-like_dom 231 302
No external refs found!