Sam_g19900

Description : component *(bL35c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006536 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006536_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g19900

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00070230	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.04	OrthoFinder output from all 47 species
AT2G24090	No alias	Ribosomal protein L35	0.02	OrthoFinder output from all 47 species
Adi_g032989	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Als_g18654	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g18112	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g00423	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.15G044500.1	Ceric.15G044500	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cre04.g217932	No alias	Protein biosynthesis.organelle translation...	0.01	OrthoFinder output from all 47 species
Dac_g26648	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g43056	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dde_g06179	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Ehy_g03085	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
GSVIVT01012561001	No alias	Protein biosynthesis.organelle translation...	0.01	OrthoFinder output from all 47 species
LOC_Os06g43900.1	LOC_Os06g43900	component psRPL35 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
MA_181338g0010	No alias	component psRPL35 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Mp5g05850.1	No alias	component psRPL35 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Msp_g20481	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pir_g14080	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pnu_g04836	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ppi_g18684	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014110	No alias	component *(bL35c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Solyc07g006000.3.1	Solyc07g006000	component psRPL35 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021137	Ribosomal_L35	59	117

External Links

No external refs found!

Sam_g19900

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation