Description : protein involved in PS-I assembly *(YCF3) & original description: none
Gene families : OG0006366 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006366_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Sam_g21679 | |
| Cluster | HCCA: Cluster_151 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| ATCG00360 | YCF3 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g34996 | YCF3 | protein involved in PS-I assembly *(YCF3) & original... | 0.13 | OrthoFinder output from all 47 species | |
| Als_g33718 | YCF3 | protein involved in PS-I assembly *(YCF3) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g70304 | YCF3 | protein involved in PS-I assembly *(YCF3) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.02G013500.1 | YCF3, Ceric.02G013500 | protein involved in PS-I assembly *(YCF3) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.09G047900.1 | YCF3, Ceric.09G047900 | protein involved in PS-I assembly *(YCF3) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.1Z022600.1 | YCF3, Ceric.1Z022600 | protein involved in PS-I assembly *(YCF3) & original... | 0.13 | OrthoFinder output from all 47 species | |
| Ceric.1Z161500.1 | YCF3, Ceric.1Z161500 | not classified & original description: pacid=50596948... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.26G038300.1 | YCF3, Ceric.26G038300 | not classified & original description: pacid=50599550... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.29G032800.1 | YCF3, Ceric.29G032800 | protein involved in PS-I assembly *(YCF3) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.31G008800.1 | Ceric.31G008800 | not classified & original description: pacid=50574640... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.33G023800.1 | YCF3, Ceric.33G023800 | protein involved in PS-I assembly *(YCF3) & original... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g57966.1 | YCF3, LOC_Os01g57966 | YCF3 protein involved in PS-I assembly | 0.11 | OrthoFinder output from all 47 species | |
| LOC_Os04g16736.1 | YCF3, LOC_Os04g16736 | YCF3 protein involved in PS-I assembly | 0.11 | OrthoFinder output from all 47 species | |
| LOC_Os04g16762.1 | YCF3, LOC_Os04g16762 | YCF3 protein involved in PS-I assembly | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os10g21254.1 | YCF3, LOC_Os10g21254 | YCF3 protein involved in PS-I assembly | 0.11 | OrthoFinder output from all 47 species | |
| LOC_Os10g38216.1 | YCF3, LOC_Os10g38216 | YCF3 protein involved in PS-I assembly | 0.11 | OrthoFinder output from all 47 species | |
| Lfl_g14015 | YCF3 | not classified & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Lfl_g19607 | YCF3 | protein involved in PS-I assembly *(YCF3) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Ore_g20105 | YCF3 | protein involved in PS-I assembly *(YCF3) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g08805 | YCF3 | protein involved in PS-I assembly *(YCF3) & original... | 0.11 | OrthoFinder output from all 47 species | |
| Ppi_g12009 | YCF3 | protein involved in PS-I assembly *(YCF3) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc00g500058.1.1 | YCF3, Solyc00g500058 | YCF3 protein involved in PS-I assembly | 0.05 | OrthoFinder output from all 47 species | |
| Solyc00g500059.1.1 | Solyc00g500059 | Photosystem I assembly protein Ycf3 OS=Solanum... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc00g500144.1.1 | Solyc00g500144 | Photosystem I assembly protein Ycf3 OS=Solanum... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc00g500210.1.1 | YCF3, Solyc00g500210 | YCF3 protein involved in PS-I assembly | 0.05 | OrthoFinder output from all 47 species | |
| Solyc00g500211.1.1 | Solyc00g500211 | Photosystem I assembly protein Ycf3 OS=Solanum... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc09g015280.1.1 | YCF3, Solyc09g015280 | Photosystem I assembly protein Ycf3 OS=Solanum... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc09g015320.3.1 | PSAA, Solyc09g015320 | Photosystem I P700 chlorophyll a apoprotein A1... | 0.08 | OrthoFinder output from all 47 species | |
| Spa_g00949 | YCF3 | protein involved in PS-I assembly *(YCF3) & original... | 0.09 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
| BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0015986 | proton motive force-driven ATP synthesis | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034220 | monoatomic ion transmembrane transport | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
| CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | HCCA |
| BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| BP | GO:0098655 | monoatomic cation transmembrane transport | IEP | HCCA |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | HCCA |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | HCCA |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
| BP | GO:1902600 | proton transmembrane transport | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001440 | TPR_1 | 73 | 102 |
| No external refs found! |
