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  5. Sam_g22478

Sam_g22478


Description : WRKY-type transcription factor & original description: none


Gene families : OG0000020 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g22478
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AT1G68150 WRKY9, ATWRKY9 WRKY DNA-binding protein 9 0.03 OrthoFinder output from all 47 species
AT2G03340 WRKY3 WRKY DNA-binding protein 3 0.02 OrthoFinder output from all 47 species
AT2G21900 ATWRKY59, WRKY59 WRKY DNA-binding protein 59 0.02 OrthoFinder output from all 47 species
AT2G47260 WRKY23, ATWRKY23 WRKY DNA-binding protein 23 0.03 OrthoFinder output from all 47 species
AT4G26640 AtWRKY20, WRKY20 WRKY family transcription factor family protein 0.04 OrthoFinder output from all 47 species
Aev_g32350 WRKY75, ATWRKY75 WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33360 WRKY6, ATWRKY6 WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11196 No alias WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g08377 ATWRKY57, WRKY57 WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16136 ATWRKY71, WRKY71 WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30007.t1 ATWRKY45,... WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65374.t1 ATWRKY24,... WRKY-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene65375.t1 ATWRKY24,... WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0052.g031586 WRKY75, ATWRKY75 WRKY-type transcription factor & original description: CDS=1-864 0.03 OrthoFinder output from all 47 species
Cba_g02867 WRKY43, ATWRKY43 WRKY-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.13G048500.1 Ceric.13G048500 not classified & original description: pacid=50636587... 0.03 OrthoFinder output from all 47 species
Ceric.1Z119500.1 WRKY28,... WRKY-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.20G087100.1 Ceric.20G087100 WRKY-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.25G052100.1 WRKY42,... WRKY-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.31G073200.1 WRKY28,... WRKY-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.31G073300.1 WRKY28,... WRKY-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g14822 No alias WRKY-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31448 WRKY28, ATWRKY28 WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27429 WRKY72, ATWRKY72 WRKY-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01020864001 WRKY28, ATWRKY28 RNA biosynthesis.transcriptional activation.WRKY... 0.05 OrthoFinder output from all 47 species
GSVIVT01029688001 WRKY9, ATWRKY9 RNA biosynthesis.transcriptional activation.WRKY... 0.03 OrthoFinder output from all 47 species
GSVIVT01034148001 WRKY49, ATWRKY49 RNA biosynthesis.transcriptional activation.WRKY... 0.02 OrthoFinder output from all 47 species
LOC_Os02g43560.1 LOC_Os02g43560 transcription factor (WRKY) 0.04 OrthoFinder output from all 47 species
LOC_Os04g46060.1 LOC_Os04g46060 transcription factor (WRKY) 0.03 OrthoFinder output from all 47 species
LOC_Os09g30400.3 WRKY2, ATWRKY2,... transcription factor (WRKY) 0.05 OrthoFinder output from all 47 species
LOC_Os11g02480.2 WRKY55,... transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species
Len_g48398 WRKY42, AtWRKY42 WRKY-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428091g0010 WRKY42, AtWRKY42 transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species
MA_120697g0010 ATWRKY71, WRKY71 transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species
MA_120969g0010 WRKY4 transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species
MA_212937g0010 WRKY6, ATWRKY6 transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species
MA_2290g0010 ATWRKY30, WRKY30 transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species
MA_310991g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_381058g0010 WRKY18, ATWRKY18 transcription factor (WRKY) 0.05 OrthoFinder output from all 47 species
MA_49848g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_6177g0010 AtWRKY41, WRKY41 transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species
Ore_g19872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29204 ATWRKY71, WRKY71 WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16309 WRKY28, ATWRKY28 WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02742 ATWRKY50, WRKY50 WRKY-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42318 WRKY6, ATWRKY6 WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g42620 ATWRKY71, WRKY71 WRKY-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0108.g020447 WRKY72, ATWRKY72 WRKY-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0135.g022367 ATWRKY58, WRKY58 WRKY-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g28984 No alias WRKY-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34683 No alias WRKY-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38149 No alias WRKY-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40618 No alias WRKY-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g058540.3.1 WRKY48,... transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species
Solyc02g094270.2.1 WRKY75,... transcription factor (WRKY) 0.03 OrthoFinder output from all 47 species
Solyc04g056365.1.1 Solyc04g056365 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc07g056280.3.1 ATWRKY71,... transcription factor (WRKY) 0.03 OrthoFinder output from all 47 species
Solyc08g081630.2.1 WRKY56,... transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species
Solyc12g011200.3.1 WRKY28,... transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species
Spa_g37539 WRKY6, ATWRKY6 WRKY-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g31472 No alias WRKY-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e007834_P002 WRKY2, ATWRKY2,... transcription factor (WRKY) 0.03 OrthoFinder output from all 47 species
Zm00001e016669_P001 ATWRKY13,... transcription factor (WRKY) 0.03 OrthoFinder output from all 47 species
Zm00001e018502_P001 WRKY49,... transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species
Zm00001e024352_P003 WRKY2, ATWRKY2,... transcription factor (WRKY) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR003657 WRKY_dom 387 427
No external refs found!