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  5. Sam_g23302

Sam_g23302


Description : component *(eL42) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001983 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001983_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g23302
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00123980 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AT4G14320 No alias Zinc-binding ribosomal protein family protein 0.03 OrthoFinder output from all 47 species
Aob_g21815 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g17011 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Cba_g69678 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ceric.07G068200.1 Ceric.07G068200 component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000489.11 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre06.g310700 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Dac_g46318 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g17062 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g27487 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g51127 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dde_g26679 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01012052001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
GSVIVT01032097001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Gb_13148 No alias component RPL36a of LSU proteome component 0.05 OrthoFinder output from all 47 species
Gb_34419 No alias component RPL36a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Lfl_g25065 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_99845g0010 No alias component RPL36a of LSU proteome component 0.05 OrthoFinder output from all 47 species
Mp2g25770.1 No alias component RPL36a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Msp_g06398 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g09392 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g43827 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ore_g00450 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c26_11220V3.1 Pp3c26_11220 Zinc-binding ribosomal protein family protein 0.03 OrthoFinder output from all 47 species
Pp3c3_10260V3.1 Pp3c3_10260 Zinc-binding ribosomal protein family protein 0.06 OrthoFinder output from all 47 species
Pp3c7_20120V3.1 Pp3c7_20120 Zinc-binding ribosomal protein family protein 0.01 OrthoFinder output from all 47 species
Ppi_g28165 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g05799 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo161986 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Solyc03g112850.3.1 Solyc03g112850 component RPL36a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Spa_g55229 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Tin_g29053 No alias component *(eL42) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e033410_P001 Zm00001e033410 component RPL36a of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005751 mitochondrial respiratory chain complex IV IEP HCCA
BP GO:0006123 mitochondrial electron transport, cytochrome c to oxygen IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0045277 respiratory chain complex IV IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
InterPro domains Description Start Stop
IPR000552 Ribosomal_L44e 17 92
No external refs found!