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  5. Sam_g23946

Sam_g23946


Description : cold-responsive mRNA chaperone *(CSD) & original description: none


Gene families : OG0001037 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001037_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g23946
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AT4G38680 ATCSP2, GRP2, CSDP2, CSP2 glycine rich protein 2 0.03 OrthoFinder output from all 47 species
Cba_g69745 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.10 No alias Cold shock protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Mp1g04040.1 GRP2B, ATGRP2B, ATCSP4 RNA chaperone (CSP). mRNA chaperone (CSD) 0.02 OrthoFinder output from all 47 species
Pnu_g32314 GRP2B, ATGRP2B, ATCSP4 cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g08100 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Sam_g06106 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.04 OrthoFinder output from all 47 species
Sam_g20242 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Sam_g21680 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Sam_g26933 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Sam_g45087 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.03 OrthoFinder output from all 47 species
Sam_g46260 No alias cold-responsive mRNA chaperone *(CSD) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001765 membrane raft assembly IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
BP GO:0031579 membrane raft organization IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044854 plasma membrane raft assembly IEP HCCA
BP GO:0044857 plasma membrane raft organization IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
BP GO:0070836 caveola assembly IEP HCCA
BP GO:0071709 membrane assembly IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 41 109
No external refs found!