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  5. Sam_g24051

Sam_g24051


Description : substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB) & original description: none


Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24051

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00126140 AFB2,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Adi_g015381 COI1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g056234 AFB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g112627 TIR1 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Ala_g11817 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Aob_g03539 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Aop_g11731 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Aop_g29642 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene04139.t1 TIR1, Aspi01Gene04139 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene11804.t1 AFB2, Aspi01Gene11804 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Aspi01Gene60736.t1 AFB2, Aspi01Gene60736 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Ceric.16G039600.1 AFB2, Ceric.16G039600 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Ceric.1Z143900.1 COI1, Ceric.1Z143900 not classified & original description: pacid=50567868... 0.02 OrthoFinder output from all 47 species
Ceric.1Z144000.1 COI1, Ceric.1Z144000 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g07920 TIR1 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
LOC_Os04g32460.1 AFB2, LOC_Os04g32460 component TIR1/AFB of auxin receptor complex. component... 0.04 OrthoFinder output from all 47 species
Len_g15985 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
MA_10189662g0010 AFB2 Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp2g26590.1 COI1 component COI of jasmonic acid receptor complex 0.02 OrthoFinder output from all 47 species
Ore_g26263 TIR1 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Pnu_g20969 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Smo104859 No alias Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Smo168175 AFB2 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Spa_g08292 AFB2 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.03 OrthoFinder output from all 47 species
Spa_g18002 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Spa_g26581 COI1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54531 COI1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12321 COI1 component *(COI) of jasmonic acid receptor complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e023831_P001 Zm00001e023831 component TIR1/AFB of auxin receptor complex. component... 0.03 OrthoFinder output from all 47 species
Zm00001e027505_P001 TIR1, Zm00001e027505 component TIR1/AFB of auxin receptor complex. component... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 492 511
IPR041567 COI1_F-box 20 58
IPR041101 Transp_inhibit 79 116
No external refs found!