Sam_g24540


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g24540

Target Alias Description ECC score Gene Family Method Actions
AT3G49710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g101211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06254 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07982 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21708 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16437 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24412 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07262 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g12767 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30595 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30874 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07964 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27232 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g27914 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g28676 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g42153 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16182 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16410 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20429 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20851 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g67880 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene12659.t1 Aspi01Gene12659 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene21870.t1 EMB2758, Aspi01Gene21870 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30517.t2 CRR22, Aspi01Gene30517 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0028.g023864 No alias not classified & original description: CDS=1-2211 0.03 OrthoFinder output from all 47 species
Azfi_s0231.g059276 No alias not classified & original description: CDS=103-2055 0.03 OrthoFinder output from all 47 species
Cba_g07194 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g20479 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g27366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75269 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75809 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.22G004400.1 Ceric.22G004400 not classified & original description: pacid=50613941... 0.02 OrthoFinder output from all 47 species
Dac_g02368 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g23468 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g30064 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g30147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g34941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g42645 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47882 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23635 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26917 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025639001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 OrthoFinder output from all 47 species
GSVIVT01030836001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
GSVIVT01033837001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os02g44480.1 LOC_Os02g44480 Pentatricopeptide repeat-containing protein At5g39350... 0.02 OrthoFinder output from all 47 species
LOC_Os08g42610.1 OTP81, LOC_Os08g42610 Pentatricopeptide repeat-containing protein At2g29760,... 0.02 OrthoFinder output from all 47 species
LOC_Os11g45410.1 LOC_Os11g45410 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.02 OrthoFinder output from all 47 species
Len_g04332 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g05445 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g24103 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g33284 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04922 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05666 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10302 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g19289 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g37653 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10435641g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_10721g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_6329g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Msp_g14847 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g28724 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31349 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33669 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g17317 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44143 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57968 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63496 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_4890V3.1 Pp3c17_4890 mitochondrial editing factor 22 0.01 OrthoFinder output from all 47 species
Ppi_g13232 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13844 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16080 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g17174 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22255 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g47516 OTP85 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g57671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000724 No alias not classified & original description: CDS=90-728 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017192 No alias not classified & original description: CDS=402-2123 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018372 No alias not classified & original description: CDS=50-2203 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0111.g020713 No alias not classified & original description: CDS=1-3843 0.03 OrthoFinder output from all 47 species
Sam_g06558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g07135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g24177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26571 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g45773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21770 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g45439 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014825_P001 Zm00001e014825 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Zm00001e034478_P001 Zm00001e034478 Pentatricopeptide repeat-containing protein At3g24000,... 0.02 OrthoFinder output from all 47 species
Zm00001e039394_P003 Zm00001e039394 Pentatricopeptide repeat-containing protein At5g04780,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 76 101
IPR002885 Pentatricopeptide_repeat 175 222
No external refs found!