Sam_g24702

Description : E3 ubiquitin ligase *(PUB8) & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g24702

Target	Alias	Description	ECC score	Gene Family Method
Als_g38714	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g02170	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g32107	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Cre03.g178550	No alias	Dynein assembly factor with WDR repeat domains 1...	0.02	OrthoFinder output from all 47 species
LOC_Os02g28720.1	PUB9, ATPUB9,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Sam_g19747	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g39035	No alias	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006911	ARM-rpt_dom	134	280
IPR000225	Armadillo	303	341
IPR003613	Ubox_domain	6	75

External Links

No external refs found!