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  5. Sam_g25277

Sam_g25277


Description : not classified & original description: none


Gene families : OG0000449 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000449_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25277

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00135p00069650 RPT3, NPH3,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AT2G14820 NPY2 Phototropic-responsive NPH3 family protein 0.02 OrthoFinder output from all 47 species
Ala_g18908 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species
Als_g08124 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aob_g19940 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aop_g09592 RPT3, NPH3, JK218 substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aspi01Gene04013.t1 Aspi01Gene04013 substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aspi01Gene08949.t1 Aspi01Gene08949 substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aspi01Gene09339.t1 RPT3, NPH3,... substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin... 0.03 OrthoFinder output from all 47 species
Aspi01Gene23539.t1 Aspi01Gene23539 substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aspi01Gene58781.t1 Aspi01Gene58781 substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Cba_g07235 NPY2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16053 RPT3, NPH3, JK218 substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01035968001 MAB4, NPY1, ENP BTB/POZ domain-containing protein NPY1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01037852001 NPY2 BTB/POZ domain-containing protein NPY2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_04489 No alias BTB/POZ domain-containing protein At1g67900... 0.03 OrthoFinder output from all 47 species
LOC_Os02g35970.1 RPT3, NPH3,... component NPH3 of CUL3-BTB E3 ubiquitin ligase complex 0.02 OrthoFinder output from all 47 species
MA_52004g0010 RPT3, NPH3, JK218 component NPH3 of CUL3-BTB E3 ubiquitin ligase complex 0.02 OrthoFinder output from all 47 species
Nbi_g03754 RPT3, NPH3, JK218 substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin... 0.02 OrthoFinder output from all 47 species
Pir_g20228 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ppi_g03108 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ppi_g49328 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001683 No alias not classified & original description: CDS=1-1248 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005086 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sam_g12100 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38846 No alias substrate adaptor of CUL3-based E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Solyc03g044090.4.1 NPY2, Solyc03g044090 BTB/POZ domain-containing protein NPY2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc10g049660.2.1 NPY2, Solyc10g049660 BTB/POZ domain-containing protein NPY2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Tin_g07210 No alias substrate adaptor of CUL3-based E3 ubiquiTin ligase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR027356 NPH3_dom 247 565
No external refs found!