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  5. Sam_g25356

Sam_g25356


Description : not classified & original description: none


Gene families : OG0002006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25356

Target Alias Description ECC score Gene Family Method Actions
AT5G63960 EMB2780 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Adi_g020465 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Aspi01Gene72656.t1 EMB2780, Aspi01Gene72656 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0008.g011315 ATREV3, REV3 not classified & original description: CDS=841-2013 0.02 OrthoFinder output from all 47 species
Nbi_g06298 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species
Pp3c10_11570V3.1 EMB2780, Pp3c10_11570 DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from all 47 species
Pp3c13_14630V3.1 EMB2780, Pp3c13_14630 DNA binding;nucleotide binding;nucleic acid... 0.01 OrthoFinder output from all 47 species
Pp3c14_3970V3.1 Pp3c14_3970 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c15_13700V3.1 Pp3c15_13700 DNA binding;nucleotide binding;nucleic acid... 0.01 OrthoFinder output from all 47 species
Pp3c16_6050V3.1 EMB2780, Pp3c16_6050 DNA binding;nucleotide binding;nucleic acid... 0.01 OrthoFinder output from all 47 species
Pp3c25_2990V3.1 EMB2780, Pp3c25_2990 DNA binding;nucleotide binding;nucleic acid... 0.01 OrthoFinder output from all 47 species
Pp3c2_390V3.1 EMB2780, Pp3c2_390 DNA binding;nucleotide binding;nucleic acid... 0.01 OrthoFinder output from all 47 species
Sam_g08942 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25588 No alias EC_2.7 transferase transferring phosphorus-containing... 0.02 OrthoFinder output from all 47 species
Sam_g35205 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21973 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR025687 Znf-C4pol 404 479
IPR006134 DNA-dir_DNA_pol_B_multi_dom 28 363
No external refs found!