1. Home
  2. Species
  3. Salvinia molesta
  4. Sequence
  5. Sam_g25380

Sam_g25380


Description : Nonsense-Mediated mRNA Decay effector protein *(UPF1) & original description: none


Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25380
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00142490 UPF1, ATUPF1,... RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.02 OrthoFinder output from all 47 species
AT5G47010 UPF1, ATUPF1, LBA1 RNA helicase, putative 0.07 OrthoFinder output from all 47 species
Adi_g055495 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Aev_g29734 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Ala_g16050 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.07 OrthoFinder output from all 47 species
Als_g15234 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Als_g22322 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Als_g32607 UPF1, ATUPF1, LBA1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17076 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene01492.t1 UPF1, ATUPF1,... Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene28242.t1 UPF1, ATUPF1,... Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Cba_g31771 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Ceric.37G063700.1 UPF1, ATUPF1,... Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.07 OrthoFinder output from all 47 species
Cre02.g092500 UPF1, ATUPF1, LBA1 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.01 OrthoFinder output from all 47 species
Dcu_g11492 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.05 OrthoFinder output from all 47 species
Dcu_g20574 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.06 OrthoFinder output from all 47 species
Ehy_g19605 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01013247001 UPF1, ATUPF1, LBA1 RNA processing.RNA decay.Nonsense-Mediated mRNA Decay... 0.09 OrthoFinder output from all 47 species
Gb_10556 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.02 OrthoFinder output from all 47 species
Gb_22830 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.05 OrthoFinder output from all 47 species
LOC_Os07g31340.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.05 OrthoFinder output from all 47 species
Lfl_g04285 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
MA_10326503g0010 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.03 OrthoFinder output from all 47 species
MA_10435183g0010 UPF1, ATUPF1, LBA1 Regulator of nonsense transcripts 1 homolog... 0.02 OrthoFinder output from all 47 species
MA_10436671g0010 UPF1, ATUPF1, LBA1 Regulator of nonsense transcripts 1 homolog... 0.05 OrthoFinder output from all 47 species
MA_369530g0010 UPF1, ATUPF1, LBA1 Regulator of nonsense transcripts 1 homolog... 0.04 OrthoFinder output from all 47 species
Mp1g01200.1 UPF1, ATUPF1, LBA1 UPF1 Nonsense-Mediated mRNA Decay effector protein 0.05 OrthoFinder output from all 47 species
Msp_g13210 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Nbi_g13849 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.02 OrthoFinder output from all 47 species
Pir_g11844 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.06 OrthoFinder output from all 47 species
Ppi_g52670 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004722 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.04 OrthoFinder output from all 47 species
Solyc08g007110.4.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 OrthoFinder output from all 47 species
Solyc08g077420.3.1 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.04 OrthoFinder output from all 47 species
Spa_g48749 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.03 OrthoFinder output from all 47 species
Spa_g48750 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.07 OrthoFinder output from all 47 species
Tin_g07774 UPF1, ATUPF1, LBA1 Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... 0.06 OrthoFinder output from all 47 species
Zm00001e010427_P002 UPF1, ATUPF1,... UPF1 Nonsense-Mediated mRNA Decay effector protein 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR041677 DNA2/NAM7_AAA_11 529 624
IPR018999 UPF1_CH/ZBD 71 224
IPR040812 UPF1_1B_dom 276 365
IPR041679 DNA2/NAM7-like_C 634 829
IPR006935 Helicase/UvrB_N 423 489
No external refs found!