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  5. Sam_g25594

Sam_g25594


Description : Met-tRNA positioning component *(eIF5B) of initiator tRNA carrier complex & original description: none


Gene families : OG0003112 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003112_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Sam_g25594

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00247p00011460 evm_27.TU.AmTr_v1... Protein biosynthesis.translation initiation.eIF5B... 0.03 OrthoFinder output from all 47 species
AT1G21160 No alias eukaryotic translation initiation factor 2 (eIF-2) family protein 0.02 OrthoFinder output from all 47 species
Adi_g012011 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.04 OrthoFinder output from all 47 species
Aev_g37468 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Ala_g02700 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Aob_g07436 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Ceric.31G051600.1 Ceric.31G051600 Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Cre02.g078100 No alias Protein biosynthesis.translation initiation.eIF5B... 0.02 OrthoFinder output from all 47 species
Dac_g13418 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.03 OrthoFinder output from all 47 species
Ehy_g14997 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
GSVIVT01034895001 No alias Protein biosynthesis.translation initiation.eIF5B... 0.02 OrthoFinder output from all 47 species
LOC_Os05g51500.1 LOC_Os05g51500 Met-tRNA positioning component eIF5B of initiator tRNA... 0.05 OrthoFinder output from all 47 species
Lfl_g03512 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Mp4g09260.1 No alias Met-tRNA positioning component eIF5B of initiator tRNA... 0.03 OrthoFinder output from all 47 species
Msp_g13519 No alias Met-tRNA positioning component *(eIF5B) of initiator... 0.02 OrthoFinder output from all 47 species
Smo166557 No alias Protein biosynthesis.translation initiation.eIF5B... 0.02 OrthoFinder output from all 47 species
Solyc03g058350.4.1 Solyc03g058350 Met-tRNA positioning component eIF5B of initiator tRNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR004161 EFTu-like_2 1167 1243
IPR023115 TIF_IF2_dom3 1257 1369
IPR000795 T_Tr_GTP-bd_dom 932 1139
No external refs found!