Sam_g25824

Description : component *(uL24) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000884 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000884_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Sam_g25824

Target	Alias	Description	ECC score	Gene Family Method
Adi_g041472	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g54650	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0003.g008074	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0064.g035484	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.06G075600.1	Ceric.06G075600	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000144.60	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Dcu_g07393	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dde_g18149	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Gb_06102	No alias	component RPL26 of LSU proteome component	0.02	OrthoFinder output from all 47 species
LOC_Os11g05370.1	LOC_Os11g05370	component RPL26 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Len_g44310	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_13141g0010	No alias	component RPL26 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Mp2g12870.1	No alias	component RPL26 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Nbi_g00193	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ore_g08094	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c14_25170V3.1	Pp3c14_25170	Translation protein SH3-like family protein	0.02	OrthoFinder output from all 47 species
Solyc03g044000.1.1	Solyc03g044000	component RPL26 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Spa_g54872	No alias	component *(uL24) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005824	KOW	68	99
IPR005756	Ribosomal_L26/L24P_euk/arc	25	138

External Links

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Sam_g25824

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation