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  5. Lfl_g28057

Lfl_g28057


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g28057

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00155170 CRR2,... Pentatricopeptide repeat-containing protein At3g46790,... 0.02 OrthoFinder output from all 47 species
Adi_g003294 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g012952 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015952 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034857 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g035612 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g036802 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g059315 SLO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067156 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067964 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g068773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g080993 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111214 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26450 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05671 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26694 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08381 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g30148 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36878 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03817 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05734 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07004 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20195 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene55895.t1 Aspi01Gene55895 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65088.t1 Aspi01Gene65088 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71053.t1 EMB2261, Aspi01Gene71053 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009227 No alias not classified & original description: CDS=1-1950 0.04 OrthoFinder output from all 47 species
Azfi_s1721.g106131 No alias not classified & original description: CDS=1-2793 0.03 OrthoFinder output from all 47 species
Cba_g05302 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07018 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07466 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g27620 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.05G035800.1 Ceric.05G035800 not classified & original description: pacid=50577834... 0.03 OrthoFinder output from all 47 species
Ceric.07G044100.1 RARE1, Ceric.07G044100 not classified & original description: pacid=50626680... 0.03 OrthoFinder output from all 47 species
Ceric.14G004700.1 Ceric.14G004700 not classified & original description: pacid=50634585... 0.03 OrthoFinder output from all 47 species
Ceric.15G015100.1 CRR22, Ceric.15G015100 not classified & original description: pacid=50640379... 0.04 OrthoFinder output from all 47 species
Ceric.18G000200.1 Ceric.18G000200 not classified & original description: pacid=50622455... 0.03 OrthoFinder output from all 47 species
Ceric.28G057800.1 REME1, Ceric.28G057800 not classified & original description: pacid=50570331... 0.02 OrthoFinder output from all 47 species
Ceric.31G002400.1 Ceric.31G002400 not classified & original description: pacid=50574432... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.28 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g28478 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05661 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08305 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12504 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16948 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17280 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36076 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36588 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22601 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22987 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46795 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50518 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12413 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g13211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14704 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19509 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26930 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033654001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 OrthoFinder output from all 47 species
LOC_Os01g72049.1 PTAC9, OSB2,... ssDNA-binding protein (OSB). TAC9 cofactor of... 0.02 OrthoFinder output from all 47 species
LOC_Os08g37520.1 LOC_Os08g37520 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
LOC_Os12g01850.1 LOC_Os12g01850 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Len_g18910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43024 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45690 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03854 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17377 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20337 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24075 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06449 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16061 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19382 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g22914 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32582 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18895 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15003 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23564 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06423 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06693 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06906 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g29398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33128 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53019 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53028 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53559 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55201 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56302 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61252 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008324 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014790 No alias not classified & original description: CDS=1-2049 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0110.g020618 REME1 not classified & original description: CDS=24-1478 0.02 OrthoFinder output from all 47 species
Sam_g51209 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g52322 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g05105 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g09530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28951 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05657 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g29865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 151 174
IPR002885 Pentatricopeptide_repeat 282 312
IPR002885 Pentatricopeptide_repeat 557 577
IPR002885 Pentatricopeptide_repeat 456 480
IPR002885 Pentatricopeptide_repeat 252 267
IPR002885 Pentatricopeptide_repeat 383 413
IPR002885 Pentatricopeptide_repeat 177 223
IPR002885 Pentatricopeptide_repeat 482 528
IPR002885 Pentatricopeptide_repeat 76 124
IPR046848 E_motif 599 661
No external refs found!